zr1394_5_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 395 lines in total Total number of methylation call strings processed: 395 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2833 Total methylated C's in CpG context: 102 Total methylated C's in CHG context: 60 Total methylated C's in CHH context: 538 Total C to T conversions in CpG context: 177 Total C to T conversions in CHG context: 300 Total C to T conversions in CHH context: 1656 C methylated in CpG context: 36.6% C methylated in CHG context: 16.7% C methylated in CHH context: 24.5%