Alignment Stats
| Sequences analysed in total |
44905078 |
| Single-end alignments with a unique best hit |
564 |
| Sequences without alignments under any condition |
44904503 |
| Sequences that did not map uniquely |
11 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4255 |
| Methylated C's in CpG context |
309 |
| Methylated C's in CHG context |
105 |
| Methylated C's in CHH context |
635 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
266 |
| Unmethylated C's in CHG context |
434 |
| Unmethylated C's in CHH context |
2506 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
53.7% |
| Percentage methylation (CHG context) |
19.5% |
| Percentage methylation (CHH context) |
20.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
74 |
original top strand |
| CTOT |
98 |
complementary to original top strand |
| CTOB |
234 |
complementary to original bottom strand |
| OB |
158 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
564 |
| Unique alignments |
352 |
| Duplicates removed |
212 |
| Duplicated alignments were found at 65 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2635 |
| Methylated C's in CpG context |
128 |
| Methylated C's in CHG context |
67 |
| Methylated C's in CHH context |
486 |
| Unmethylated C's in CpG context |
178 |
| Unmethylated C's in CHG context |
261 |
| Unmethylated C's in CHH context |
1515 |
| Percentage methylation (CpG context) |
41.8% |
| Percentage methylation (CHG context) |
20.4% |
| Percentage methylation (CHH context) |
24.3% |
|
|
M-Bias Plot
