Alignment Stats
| Sequences analysed in total |
48376729 |
| Single-end alignments with a unique best hit |
652 |
| Sequences without alignments under any condition |
48376067 |
| Sequences that did not map uniquely |
10 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4793 |
| Methylated C's in CpG context |
271 |
| Methylated C's in CHG context |
108 |
| Methylated C's in CHH context |
734 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
281 |
| Unmethylated C's in CHG context |
494 |
| Unmethylated C's in CHH context |
2905 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
49.1% |
| Percentage methylation (CHG context) |
17.9% |
| Percentage methylation (CHH context) |
20.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
113 |
original top strand |
| CTOT |
104 |
complementary to original top strand |
| CTOB |
254 |
complementary to original bottom strand |
| OB |
181 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
652 |
| Unique alignments |
386 |
| Duplicates removed |
266 |
| Duplicated alignments were found at 86 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2855 |
| Methylated C's in CpG context |
96 |
| Methylated C's in CHG context |
66 |
| Methylated C's in CHH context |
555 |
| Unmethylated C's in CpG context |
171 |
| Unmethylated C's in CHG context |
286 |
| Unmethylated C's in CHH context |
1681 |
| Percentage methylation (CpG context) |
36.0% |
| Percentage methylation (CHG context) |
18.8% |
| Percentage methylation (CHH context) |
24.8% |
|
|
M-Bias Plot
