zr1394_3_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 386 lines in total Total number of methylation call strings processed: 386 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2855 Total methylated C's in CpG context: 96 Total methylated C's in CHG context: 66 Total methylated C's in CHH context: 555 Total C to T conversions in CpG context: 171 Total C to T conversions in CHG context: 286 Total C to T conversions in CHH context: 1681 C methylated in CpG context: 36.0% C methylated in CHG context: 18.8% C methylated in CHH context: 24.8%