Alignment Stats
| Sequences analysed in total |
46105140 |
| Single-end alignments with a unique best hit |
573 |
| Sequences without alignments under any condition |
46104559 |
| Sequences that did not map uniquely |
8 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4068 |
| Methylated C's in CpG context |
248 |
| Methylated C's in CHG context |
104 |
| Methylated C's in CHH context |
684 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
239 |
| Unmethylated C's in CHG context |
394 |
| Unmethylated C's in CHH context |
2399 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
50.9% |
| Percentage methylation (CHG context) |
20.9% |
| Percentage methylation (CHH context) |
22.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
78 |
original top strand |
| CTOT |
103 |
complementary to original top strand |
| CTOB |
232 |
complementary to original bottom strand |
| OB |
160 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
573 |
| Unique alignments |
352 |
| Duplicates removed |
221 |
| Duplicated alignments were found at 79 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2573 |
| Methylated C's in CpG context |
128 |
| Methylated C's in CHG context |
62 |
| Methylated C's in CHH context |
495 |
| Unmethylated C's in CpG context |
154 |
| Unmethylated C's in CHG context |
254 |
| Unmethylated C's in CHH context |
1480 |
| Percentage methylation (CpG context) |
45.4% |
| Percentage methylation (CHG context) |
19.6% |
| Percentage methylation (CHH context) |
25.1% |
|
|
M-Bias Plot
