zr1394_2_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 352 lines in total Total number of methylation call strings processed: 352 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2573 Total methylated C's in CpG context: 128 Total methylated C's in CHG context: 62 Total methylated C's in CHH context: 495 Total C to T conversions in CpG context: 154 Total C to T conversions in CHG context: 254 Total C to T conversions in CHH context: 1480 C methylated in CpG context: 45.4% C methylated in CHG context: 19.6% C methylated in CHH context: 25.1%