Alignment Stats
| Sequences analysed in total |
46792286 |
| Single-end alignments with a unique best hit |
605 |
| Sequences without alignments under any condition |
46791676 |
| Sequences that did not map uniquely |
5 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4335 |
| Methylated C's in CpG context |
272 |
| Methylated C's in CHG context |
104 |
| Methylated C's in CHH context |
698 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
245 |
| Unmethylated C's in CHG context |
427 |
| Unmethylated C's in CHH context |
2589 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
52.6% |
| Percentage methylation (CHG context) |
19.6% |
| Percentage methylation (CHH context) |
21.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
109 |
original top strand |
| CTOT |
105 |
complementary to original top strand |
| CTOB |
220 |
complementary to original bottom strand |
| OB |
171 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
605 |
| Unique alignments |
399 |
| Duplicates removed |
206 |
| Duplicated alignments were found at 77 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2858 |
| Methylated C's in CpG context |
126 |
| Methylated C's in CHG context |
70 |
| Methylated C's in CHH context |
567 |
| Unmethylated C's in CpG context |
162 |
| Unmethylated C's in CHG context |
286 |
| Unmethylated C's in CHH context |
1647 |
| Percentage methylation (CpG context) |
43.8% |
| Percentage methylation (CHG context) |
19.7% |
| Percentage methylation (CHH context) |
25.6% |
|
|
M-Bias Plot
