zr1394_1_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 399 lines in total Total number of methylation call strings processed: 399 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2858 Total methylated C's in CpG context: 126 Total methylated C's in CHG context: 70 Total methylated C's in CHH context: 567 Total C to T conversions in CpG context: 162 Total C to T conversions in CHG context: 286 Total C to T conversions in CHH context: 1647 C methylated in CpG context: 43.8% C methylated in CHG context: 19.7% C methylated in CHH context: 25.6%