Alignment Stats
| Sequences analysed in total |
55048106 |
| Single-end alignments with a unique best hit |
641 |
| Sequences without alignments under any condition |
55047455 |
| Sequences that did not map uniquely |
10 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4730 |
| Methylated C's in CpG context |
260 |
| Methylated C's in CHG context |
93 |
| Methylated C's in CHH context |
700 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
298 |
| Unmethylated C's in CHG context |
501 |
| Unmethylated C's in CHH context |
2878 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
46.6% |
| Percentage methylation (CHG context) |
15.7% |
| Percentage methylation (CHH context) |
19.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
93 |
original top strand |
| CTOT |
110 |
complementary to original top strand |
| CTOB |
267 |
complementary to original bottom strand |
| OB |
171 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
641 |
| Unique alignments |
386 |
| Duplicates removed |
255 |
| Duplicated alignments were found at 82 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2839 |
| Methylated C's in CpG context |
104 |
| Methylated C's in CHG context |
55 |
| Methylated C's in CHH context |
509 |
| Unmethylated C's in CpG context |
185 |
| Unmethylated C's in CHG context |
294 |
| Unmethylated C's in CHH context |
1692 |
| Percentage methylation (CpG context) |
36.0% |
| Percentage methylation (CHG context) |
15.8% |
| Percentage methylation (CHH context) |
23.1% |
|
|
M-Bias Plot
