zr1394_18_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 386 lines in total Total number of methylation call strings processed: 386 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2839 Total methylated C's in CpG context: 104 Total methylated C's in CHG context: 55 Total methylated C's in CHH context: 509 Total C to T conversions in CpG context: 185 Total C to T conversions in CHG context: 294 Total C to T conversions in CHH context: 1692 C methylated in CpG context: 36.0% C methylated in CHG context: 15.8% C methylated in CHH context: 23.1%