Alignment Stats
| Sequences analysed in total |
42070546 |
| Single-end alignments with a unique best hit |
578 |
| Sequences without alignments under any condition |
42069954 |
| Sequences that did not map uniquely |
14 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4219 |
| Methylated C's in CpG context |
278 |
| Methylated C's in CHG context |
72 |
| Methylated C's in CHH context |
645 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
243 |
| Unmethylated C's in CHG context |
473 |
| Unmethylated C's in CHH context |
2508 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
53.4% |
| Percentage methylation (CHG context) |
13.2% |
| Percentage methylation (CHH context) |
20.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
70 |
original top strand |
| CTOT |
106 |
complementary to original top strand |
| CTOB |
243 |
complementary to original bottom strand |
| OB |
159 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
578 |
| Unique alignments |
368 |
| Duplicates removed |
210 |
| Duplicated alignments were found at 70 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2714 |
| Methylated C's in CpG context |
117 |
| Methylated C's in CHG context |
54 |
| Methylated C's in CHH context |
510 |
| Unmethylated C's in CpG context |
173 |
| Unmethylated C's in CHG context |
309 |
| Unmethylated C's in CHH context |
1551 |
| Percentage methylation (CpG context) |
40.3% |
| Percentage methylation (CHG context) |
14.9% |
| Percentage methylation (CHH context) |
24.7% |
|
|
M-Bias Plot
