Alignment Stats
| Sequences analysed in total |
74531056 |
| Single-end alignments with a unique best hit |
970 |
| Sequences without alignments under any condition |
74530066 |
| Sequences that did not map uniquely |
20 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
7182 |
| Methylated C's in CpG context |
642 |
| Methylated C's in CHG context |
97 |
| Methylated C's in CHH context |
860 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
342 |
| Unmethylated C's in CHG context |
761 |
| Unmethylated C's in CHH context |
4480 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
65.2% |
| Percentage methylation (CHG context) |
11.3% |
| Percentage methylation (CHH context) |
16.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
124 |
original top strand |
| CTOT |
125 |
complementary to original top strand |
| CTOB |
382 |
complementary to original bottom strand |
| OB |
339 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
970 |
| Unique alignments |
501 |
| Duplicates removed |
469 |
| Duplicated alignments were found at 91 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3557 |
| Methylated C's in CpG context |
160 |
| Methylated C's in CHG context |
65 |
| Methylated C's in CHH context |
629 |
| Unmethylated C's in CpG context |
228 |
| Unmethylated C's in CHG context |
375 |
| Unmethylated C's in CHH context |
2100 |
| Percentage methylation (CpG context) |
41.2% |
| Percentage methylation (CHG context) |
14.8% |
| Percentage methylation (CHH context) |
23.0% |
|
|
M-Bias Plot
