zr1394_16_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 501 lines in total Total number of methylation call strings processed: 501 Final Cytosine Methylation Report ================================= Total number of C's analysed: 3557 Total methylated C's in CpG context: 160 Total methylated C's in CHG context: 65 Total methylated C's in CHH context: 629 Total C to T conversions in CpG context: 228 Total C to T conversions in CHG context: 375 Total C to T conversions in CHH context: 2100 C methylated in CpG context: 41.2% C methylated in CHG context: 14.8% C methylated in CHH context: 23.0%