Alignment Stats
| Sequences analysed in total |
67984205 |
| Single-end alignments with a unique best hit |
928 |
| Sequences without alignments under any condition |
67983264 |
| Sequences that did not map uniquely |
13 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
7043 |
| Methylated C's in CpG context |
600 |
| Methylated C's in CHG context |
121 |
| Methylated C's in CHH context |
857 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
341 |
| Unmethylated C's in CHG context |
753 |
| Unmethylated C's in CHH context |
4371 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
63.8% |
| Percentage methylation (CHG context) |
13.8% |
| Percentage methylation (CHH context) |
16.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
114 |
original top strand |
| CTOT |
152 |
complementary to original top strand |
| CTOB |
385 |
complementary to original bottom strand |
| OB |
277 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
928 |
| Unique alignments |
490 |
| Duplicates removed |
438 |
| Duplicated alignments were found at 108 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3529 |
| Methylated C's in CpG context |
164 |
| Methylated C's in CHG context |
80 |
| Methylated C's in CHH context |
597 |
| Unmethylated C's in CpG context |
212 |
| Unmethylated C's in CHG context |
401 |
| Unmethylated C's in CHH context |
2075 |
| Percentage methylation (CpG context) |
43.6% |
| Percentage methylation (CHG context) |
16.6% |
| Percentage methylation (CHH context) |
22.3% |
|
|
M-Bias Plot
