Alignment Stats
| Sequences analysed in total |
87834637 |
| Single-end alignments with a unique best hit |
1106 |
| Sequences without alignments under any condition |
87833515 |
| Sequences that did not map uniquely |
16 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
8310 |
| Methylated C's in CpG context |
686 |
| Methylated C's in CHG context |
145 |
| Methylated C's in CHH context |
1042 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
388 |
| Unmethylated C's in CHG context |
839 |
| Unmethylated C's in CHH context |
5210 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
63.9% |
| Percentage methylation (CHG context) |
14.7% |
| Percentage methylation (CHH context) |
16.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
155 |
original top strand |
| CTOT |
167 |
complementary to original top strand |
| CTOB |
442 |
complementary to original bottom strand |
| OB |
342 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
1106 |
| Unique alignments |
546 |
| Duplicates removed |
560 |
| Duplicated alignments were found at 124 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
4006 |
| Methylated C's in CpG context |
197 |
| Methylated C's in CHG context |
96 |
| Methylated C's in CHH context |
717 |
| Unmethylated C's in CpG context |
234 |
| Unmethylated C's in CHG context |
412 |
| Unmethylated C's in CHH context |
2350 |
| Percentage methylation (CpG context) |
45.7% |
| Percentage methylation (CHG context) |
18.9% |
| Percentage methylation (CHH context) |
23.4% |
|
|
M-Bias Plot
