Alignment Stats
| Sequences analysed in total |
64352550 |
| Single-end alignments with a unique best hit |
842 |
| Sequences without alignments under any condition |
64351693 |
| Sequences that did not map uniquely |
15 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
6280 |
| Methylated C's in CpG context |
478 |
| Methylated C's in CHG context |
106 |
| Methylated C's in CHH context |
828 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
359 |
| Unmethylated C's in CHG context |
691 |
| Unmethylated C's in CHH context |
3818 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
57.1% |
| Percentage methylation (CHG context) |
13.3% |
| Percentage methylation (CHH context) |
17.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
108 |
original top strand |
| CTOT |
142 |
complementary to original top strand |
| CTOB |
338 |
complementary to original bottom strand |
| OB |
254 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
842 |
| Unique alignments |
438 |
| Duplicates removed |
404 |
| Duplicated alignments were found at 107 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3236 |
| Methylated C's in CpG context |
162 |
| Methylated C's in CHG context |
64 |
| Methylated C's in CHH context |
595 |
| Unmethylated C's in CpG context |
199 |
| Unmethylated C's in CHG context |
366 |
| Unmethylated C's in CHH context |
1850 |
| Percentage methylation (CpG context) |
44.9% |
| Percentage methylation (CHG context) |
14.9% |
| Percentage methylation (CHH context) |
24.3% |
|
|
M-Bias Plot
