Alignment Stats
| Sequences analysed in total |
59459431 |
| Single-end alignments with a unique best hit |
715 |
| Sequences without alignments under any condition |
59458705 |
| Sequences that did not map uniquely |
11 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
5132 |
| Methylated C's in CpG context |
266 |
| Methylated C's in CHG context |
96 |
| Methylated C's in CHH context |
849 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
309 |
| Unmethylated C's in CHG context |
522 |
| Unmethylated C's in CHH context |
3090 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
46.3% |
| Percentage methylation (CHG context) |
15.5% |
| Percentage methylation (CHH context) |
21.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
102 |
original top strand |
| CTOT |
143 |
complementary to original top strand |
| CTOB |
266 |
complementary to original bottom strand |
| OB |
204 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
715 |
| Unique alignments |
465 |
| Duplicates removed |
250 |
| Duplicated alignments were found at 88 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3375 |
| Methylated C's in CpG context |
132 |
| Methylated C's in CHG context |
67 |
| Methylated C's in CHH context |
592 |
| Unmethylated C's in CpG context |
225 |
| Unmethylated C's in CHG context |
361 |
| Unmethylated C's in CHH context |
1998 |
| Percentage methylation (CpG context) |
37.0% |
| Percentage methylation (CHG context) |
15.7% |
| Percentage methylation (CHH context) |
22.9% |
|
|
M-Bias Plot
