Alignment Stats
| Sequences analysed in total |
54458572 |
| Single-end alignments with a unique best hit |
741 |
| Sequences without alignments under any condition |
54457818 |
| Sequences that did not map uniquely |
13 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
5463 |
| Methylated C's in CpG context |
539 |
| Methylated C's in CHG context |
110 |
| Methylated C's in CHH context |
624 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
284 |
| Unmethylated C's in CHG context |
583 |
| Unmethylated C's in CHH context |
3323 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
65.5% |
| Percentage methylation (CHG context) |
15.9% |
| Percentage methylation (CHH context) |
15.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
93 |
original top strand |
| CTOT |
114 |
complementary to original top strand |
| CTOB |
281 |
complementary to original bottom strand |
| OB |
253 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
741 |
| Unique alignments |
382 |
| Duplicates removed |
359 |
| Duplicated alignments were found at 72 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2748 |
| Methylated C's in CpG context |
152 |
| Methylated C's in CHG context |
79 |
| Methylated C's in CHH context |
458 |
| Unmethylated C's in CpG context |
177 |
| Unmethylated C's in CHG context |
305 |
| Unmethylated C's in CHH context |
1577 |
| Percentage methylation (CpG context) |
46.2% |
| Percentage methylation (CHG context) |
20.6% |
| Percentage methylation (CHH context) |
22.5% |
|
|
M-Bias Plot
