zr1394_11_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 382 lines in total Total number of methylation call strings processed: 382 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2748 Total methylated C's in CpG context: 152 Total methylated C's in CHG context: 79 Total methylated C's in CHH context: 458 Total C to T conversions in CpG context: 177 Total C to T conversions in CHG context: 305 Total C to T conversions in CHH context: 1577 C methylated in CpG context: 46.2% C methylated in CHG context: 20.6% C methylated in CHH context: 22.5%