Alignment Stats
| Sequences analysed in total |
78221457 |
| Single-end alignments with a unique best hit |
858 |
| Sequences without alignments under any condition |
78220584 |
| Sequences that did not map uniquely |
15 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
6062 |
| Methylated C's in CpG context |
411 |
| Methylated C's in CHG context |
116 |
| Methylated C's in CHH context |
879 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
380 |
| Unmethylated C's in CHG context |
662 |
| Unmethylated C's in CHH context |
3614 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
52.0% |
| Percentage methylation (CHG context) |
14.9% |
| Percentage methylation (CHH context) |
19.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
106 |
original top strand |
| CTOT |
186 |
complementary to original top strand |
| CTOB |
374 |
complementary to original bottom strand |
| OB |
192 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
858 |
| Unique alignments |
468 |
| Duplicates removed |
390 |
| Duplicated alignments were found at 117 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3259 |
| Methylated C's in CpG context |
152 |
| Methylated C's in CHG context |
70 |
| Methylated C's in CHH context |
570 |
| Unmethylated C's in CpG context |
219 |
| Unmethylated C's in CHG context |
370 |
| Unmethylated C's in CHH context |
1878 |
| Percentage methylation (CpG context) |
41.0% |
| Percentage methylation (CHG context) |
15.9% |
| Percentage methylation (CHH context) |
23.3% |
|
|
M-Bias Plot
