zr1394_10_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 468 lines in total Total number of methylation call strings processed: 468 Final Cytosine Methylation Report ================================= Total number of C's analysed: 3259 Total methylated C's in CpG context: 152 Total methylated C's in CHG context: 70 Total methylated C's in CHH context: 570 Total C to T conversions in CpG context: 219 Total C to T conversions in CHG context: 370 Total C to T conversions in CHH context: 1878 C methylated in CpG context: 41.0% C methylated in CHG context: 15.9% C methylated in CHH context: 23.3%