File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr1394_10_s456_trimmed_bismark_bt2.bam	78221457	858	78220584	15	0	390	468	3259	152	219	70	370	570	1878
zr1394_11_s456_trimmed_bismark_bt2.bam	54458572	741	54457818	13	0	359	382	2748	152	177	79	305	458	1577
zr1394_12_s456_trimmed_bismark_bt2.bam	59459431	715	59458705	11	0	250	465	3375	132	225	67	361	592	1998
zr1394_13_s456_trimmed_bismark_bt2.bam	64352550	842	64351693	15	0	404	438	3236	162	199	64	366	595	1850
zr1394_14_s456_trimmed_bismark_bt2.bam	87834637	1106	87833515	16	0	560	546	4006	197	234	96	412	717	2350
zr1394_15_s456_trimmed_bismark_bt2.bam	67984205	928	67983264	13	0	438	490	3529	164	212	80	401	597	2075
zr1394_16_s456_trimmed_bismark_bt2.bam	74531056	970	74530066	20	0	469	501	3557	160	228	65	375	629	2100
zr1394_17_s456_trimmed_bismark_bt2.bam	42070546	578	42069954	14	0	210	368	2714	117	173	54	309	510	1551
zr1394_18_s456_trimmed_bismark_bt2.bam	55048106	641	55047455	10	0	255	386	2839	104	185	55	294	509	1692
zr1394_1_s456_trimmed_bismark_bt2.bam	46792286	605	46791676	5	0	206	399	2858	126	162	70	286	567	1647
zr1394_2_s456_trimmed_bismark_bt2.bam	46105140	573	46104559	8	0	221	352	2573	128	154	62	254	495	1480
zr1394_3_s456_trimmed_bismark_bt2.bam	48376729	652	48376067	10	0	266	386	2855	96	171	66	286	555	1681
zr1394_4_s456_trimmed_bismark_bt2.bam	44905078	564	44904503	11	0	212	352	2635	128	178	67	261	486	1515
zr1394_5_s456_trimmed_bismark_bt2.bam	47401736	607	47401115	14	0	212	395	2833	102	177	60	300	538	1656
zr1394_6_s456_trimmed_bismark_bt2.bam	46455148	607	46454530	11	0	235	372	2748	105	186	60	319	450	1628
zr1394_7_s456_trimmed_bismark_bt2.bam	49730113	659	49729438	16	0	269	390	2860	134	201	50	336	467	1672
zr1394_8_s456_trimmed_bismark_bt2.bam	38697189	494	38696681	14	0	182	312	2240	78	131	46	202	441	1342
zr1394_9_s456_trimmed_bismark_bt2.bam	77350922	843	77350061	18	0	339	504	3665	134	248	71	385	647	2180
zr1394_all_s456_trimmed_bismark_bt2.bam	605809374	7659	605801586	129	0	5235	2424	16875	782	1132	404	1965	3040	9552