Alignment Stats
| Sequences analysed in total |
605809374 |
| Single-end alignments with a unique best hit |
532554 |
| Sequences without alignments under any condition |
604756951 |
| Sequences that did not map uniquely |
519869 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4742693 |
| Methylated C's in CpG context |
129843 |
| Methylated C's in CHG context |
74534 |
| Methylated C's in CHH context |
1017146 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
163526 |
| Unmethylated C's in CHG context |
332272 |
| Unmethylated C's in CHH context |
3025372 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
44.3% |
| Percentage methylation (CHG context) |
18.3% |
| Percentage methylation (CHH context) |
25.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
132066 |
original top strand |
| CTOT |
170121 |
complementary to original top strand |
| CTOB |
132376 |
complementary to original bottom strand |
| OB |
97991 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
532554 |
| Unique alignments |
140425 |
| Duplicates removed |
392129 |
| Duplicated alignments were found at 40399 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
988380 |
| Methylated C's in CpG context |
50777 |
| Methylated C's in CHG context |
20676 |
| Methylated C's in CHH context |
183159 |
| Unmethylated C's in CpG context |
73873 |
| Unmethylated C's in CHG context |
105337 |
| Unmethylated C's in CHH context |
554558 |
| Percentage methylation (CpG context) |
40.7% |
| Percentage methylation (CHG context) |
16.4% |
| Percentage methylation (CHH context) |
24.8% |
|
|
M-Bias Plot
