Alignment Stats
| Sequences analysed in total |
38697189 |
| Single-end alignments with a unique best hit |
37282 |
| Sequences without alignments under any condition |
38620922 |
| Sequences that did not map uniquely |
38985 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
343855 |
| Methylated C's in CpG context |
8361 |
| Methylated C's in CHG context |
5877 |
| Methylated C's in CHH context |
81599 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
10741 |
| Unmethylated C's in CHG context |
22312 |
| Unmethylated C's in CHH context |
214965 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
43.8% |
| Percentage methylation (CHG context) |
20.8% |
| Percentage methylation (CHH context) |
27.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8957 |
original top strand |
| CTOT |
12481 |
complementary to original top strand |
| CTOB |
9323 |
complementary to original bottom strand |
| OB |
6520 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
37281 |
| Unique alignments |
16682 |
| Duplicates removed |
20599 |
| Duplicated alignments were found at 3159 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
127461 |
| Methylated C's in CpG context |
5382 |
| Methylated C's in CHG context |
2475 |
| Methylated C's in CHH context |
27803 |
| Unmethylated C's in CpG context |
7089 |
| Unmethylated C's in CHG context |
10749 |
| Unmethylated C's in CHH context |
73963 |
| Percentage methylation (CpG context) |
43.2% |
| Percentage methylation (CHG context) |
18.7% |
| Percentage methylation (CHH context) |
27.3% |
|
|
M-Bias Plot
