Alignment Stats
| Sequences analysed in total |
44905078 |
| Single-end alignments with a unique best hit |
42602 |
| Sequences without alignments under any condition |
44819761 |
| Sequences that did not map uniquely |
42715 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
389304 |
| Methylated C's in CpG context |
9645 |
| Methylated C's in CHG context |
6539 |
| Methylated C's in CHH context |
89476 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
12460 |
| Unmethylated C's in CHG context |
25751 |
| Unmethylated C's in CHH context |
245433 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
43.6% |
| Percentage methylation (CHG context) |
20.3% |
| Percentage methylation (CHH context) |
26.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
10714 |
original top strand |
| CTOT |
13768 |
complementary to original top strand |
| CTOB |
10383 |
complementary to original bottom strand |
| OB |
7737 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
42602 |
| Unique alignments |
18809 |
| Duplicates removed |
23793 |
| Duplicated alignments were found at 3597 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
142595 |
| Methylated C's in CpG context |
6220 |
| Methylated C's in CHG context |
2848 |
| Methylated C's in CHH context |
31126 |
| Unmethylated C's in CpG context |
8211 |
| Unmethylated C's in CHG context |
12177 |
| Unmethylated C's in CHH context |
82013 |
| Percentage methylation (CpG context) |
43.1% |
| Percentage methylation (CHG context) |
19.0% |
| Percentage methylation (CHH context) |
27.5% |
|
|
M-Bias Plot
