Alignment Stats
| Sequences analysed in total |
46792286 |
| Single-end alignments with a unique best hit |
44887 |
| Sequences without alignments under any condition |
46701591 |
| Sequences that did not map uniquely |
45808 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
405975 |
| Methylated C's in CpG context |
9744 |
| Methylated C's in CHG context |
6987 |
| Methylated C's in CHH context |
93377 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
13251 |
| Unmethylated C's in CHG context |
26590 |
| Unmethylated C's in CHH context |
256026 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
42.4% |
| Percentage methylation (CHG context) |
20.8% |
| Percentage methylation (CHH context) |
26.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
10930 |
original top strand |
| CTOT |
14550 |
complementary to original top strand |
| CTOB |
11130 |
complementary to original bottom strand |
| OB |
8277 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
44887 |
| Unique alignments |
20374 |
| Duplicates removed |
24513 |
| Duplicated alignments were found at 3925 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
152754 |
| Methylated C's in CpG context |
6352 |
| Methylated C's in CHG context |
3158 |
| Methylated C's in CHH context |
33728 |
| Unmethylated C's in CpG context |
8815 |
| Unmethylated C's in CHG context |
12825 |
| Unmethylated C's in CHH context |
87876 |
| Percentage methylation (CpG context) |
41.9% |
| Percentage methylation (CHG context) |
19.8% |
| Percentage methylation (CHH context) |
27.7% |
|
|
M-Bias Plot
