Alignment Stats
Sequences analysed in total |
55048106 |
Single-end alignments with a unique best hit |
48702 |
Sequences without alignments under any condition |
54952474 |
Sequences that did not map uniquely |
46930 |
Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
Total C's analysed |
442168 |
Methylated C's in CpG context |
9975 |
Methylated C's in CHG context |
6531 |
Methylated C's in CHH context |
96836 |
Methylated C's in Unknown context |
0 |
Unmethylated C's in CpG context |
14995 |
Unmethylated C's in CHG context |
29693 |
Unmethylated C's in CHH context |
284138 |
Unmethylated C's in Unknown context |
0 |
Percentage methylation (CpG context) |
39.9% |
Percentage methylation (CHG context) |
18.0% |
Percentage methylation (CHH context) |
25.4% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
11572 |
original top strand |
CTOT |
16227 |
complementary to original top strand |
CTOB |
12191 |
complementary to original bottom strand |
OB |
8712 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
48702 |
Unique alignments |
20726 |
Duplicates removed |
27976 |
Duplicated alignments were found at 4284 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
157094 |
Methylated C's in CpG context |
6042 |
Methylated C's in CHG context |
2860 |
Methylated C's in CHH context |
33534 |
Unmethylated C's in CpG context |
9513 |
Unmethylated C's in CHG context |
13513 |
Unmethylated C's in CHH context |
91632 |
Percentage methylation (CpG context) |
38.8% |
Percentage methylation (CHG context) |
17.5% |
Percentage methylation (CHH context) |
26.8% |
|
|
M-Bias Plot