Alignment Stats
| Sequences analysed in total |
67984205 |
| Single-end alignments with a unique best hit |
60150 |
| Sequences without alignments under any condition |
67866144 |
| Sequences that did not map uniquely |
57911 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
537349 |
| Methylated C's in CpG context |
16572 |
| Methylated C's in CHG context |
9050 |
| Methylated C's in CHH context |
119627 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
18189 |
| Unmethylated C's in CHG context |
37658 |
| Unmethylated C's in CHH context |
336253 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
47.7% |
| Percentage methylation (CHG context) |
19.4% |
| Percentage methylation (CHH context) |
26.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15232 |
original top strand |
| CTOT |
19424 |
complementary to original top strand |
| CTOB |
14679 |
complementary to original bottom strand |
| OB |
10815 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60150 |
| Unique alignments |
26337 |
| Duplicates removed |
33813 |
| Duplicated alignments were found at 5132 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
194637 |
| Methylated C's in CpG context |
9811 |
| Methylated C's in CHG context |
4057 |
| Methylated C's in CHH context |
40377 |
| Unmethylated C's in CpG context |
11554 |
| Unmethylated C's in CHG context |
17815 |
| Unmethylated C's in CHH context |
111023 |
| Percentage methylation (CpG context) |
45.9% |
| Percentage methylation (CHG context) |
18.5% |
| Percentage methylation (CHH context) |
26.7% |
|
|
M-Bias Plot
