Alignment Stats
| Sequences analysed in total |
54458572 |
| Single-end alignments with a unique best hit |
45087 |
| Sequences without alignments under any condition |
54368235 |
| Sequences that did not map uniquely |
45250 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
404025 |
| Methylated C's in CpG context |
12838 |
| Methylated C's in CHG context |
6669 |
| Methylated C's in CHH context |
86039 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
14080 |
| Unmethylated C's in CHG context |
28775 |
| Unmethylated C's in CHH context |
255624 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
47.7% |
| Percentage methylation (CHG context) |
18.8% |
| Percentage methylation (CHH context) |
25.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11263 |
original top strand |
| CTOT |
14371 |
complementary to original top strand |
| CTOB |
11250 |
complementary to original bottom strand |
| OB |
8203 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
45087 |
| Unique alignments |
20372 |
| Duplicates removed |
24715 |
| Duplicated alignments were found at 3893 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
152158 |
| Methylated C's in CpG context |
7622 |
| Methylated C's in CHG context |
3046 |
| Methylated C's in CHH context |
30689 |
| Unmethylated C's in CpG context |
9109 |
| Unmethylated C's in CHG context |
13842 |
| Unmethylated C's in CHH context |
87850 |
| Percentage methylation (CpG context) |
45.6% |
| Percentage methylation (CHG context) |
18.0% |
| Percentage methylation (CHH context) |
25.9% |
|
|
M-Bias Plot
