Alignment Stats
| Sequences analysed in total |
78221457 |
| Single-end alignments with a unique best hit |
66725 |
| Sequences without alignments under any condition |
78101182 |
| Sequences that did not map uniquely |
53550 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
569706 |
| Methylated C's in CpG context |
17402 |
| Methylated C's in CHG context |
9468 |
| Methylated C's in CHH context |
126437 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
20804 |
| Unmethylated C's in CHG context |
41768 |
| Unmethylated C's in CHH context |
353827 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
45.5% |
| Percentage methylation (CHG context) |
18.5% |
| Percentage methylation (CHH context) |
26.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15820 |
original top strand |
| CTOT |
20927 |
complementary to original top strand |
| CTOB |
17831 |
complementary to original bottom strand |
| OB |
12147 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
66725 |
| Unique alignments |
25379 |
| Duplicates removed |
41346 |
| Duplicated alignments were found at 7140 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
183387 |
| Methylated C's in CpG context |
8263 |
| Methylated C's in CHG context |
3657 |
| Methylated C's in CHH context |
39733 |
| Unmethylated C's in CpG context |
11396 |
| Unmethylated C's in CHG context |
16606 |
| Unmethylated C's in CHH context |
103732 |
| Percentage methylation (CpG context) |
42.0% |
| Percentage methylation (CHG context) |
18.0% |
| Percentage methylation (CHH context) |
27.7% |
|
|
M-Bias Plot
