File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.bam	20349659	9095591	9572011	1682056	1	1259755	7835836	183501406	6658001	18809270	852229	36884209	1574350	118723347
EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.bam	30015261	13633935	13665400	2715925	1	2020190	11613745	256681996	10137100	24263858	1260299	51430750	2323535	167266454
EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.bam	27014996	12312882	12235438	2466675	1	1846060	10466822	231214858	8681437	22978618	1156157	46067897	1936920	150393829
EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.bam	26302191	11581685	12489960	2230545	1	1726942	9854743	224084049	8423482	22028913	1104529	44713152	1867274	145946699
EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.bam	28905983	12331886	14292877	2281217	3	1918064	10413822	243953258	8558544	25838202	1135855	48531203	2017566	157871888
EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.bam	24140505	11050080	10973461	2116961	3	1579974	9470106	217946429	8187042	21761145	1062536	43433409	1832611	141669686
EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.bam	22262118	9986594	10417464	1858059	1	1536515	8450079	196938082	7564205	19544907	967557	39233900	1694338	127933175
EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.bam	24557803	11023910	11430018	2103873	2	1723786	9300124	215109906	8244675	21307910	1071477	42824701	1772832	139888311
EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.bam	28731808	12720630	13210078	2801099	1	2161126	10559504	225992948	9046557	21842118	1202237	45361388	2001278	146539370
EPI-136_S36_L005_R1_001_val_1_bismark_bt2_pe.bam	27792315	12229033	12912342	2650939	1	1939155	10289878	222520026	8205504	22514794	1105916	44690621	1849444	144153747
EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.bam	21160872	9316818	10036514	1807539	1	1420739	7896079	180013500	6934397	17647358	872844	35893215	1579087	117086599
EPI-145_S38_L005_R1_001_val_1_bismark_bt2_pe.bam	25314513	11191274	11992514	2130723	2	1835341	9355933	214985786	8245428	21238566	1047240	42806098	1811240	139837214
EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.bam	25055317	10110532	12402840	2541943	2	3711212	6399320	128539262	5867583	11862497	687621	26124666	2454676	81542219
EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.bam	29623269	13173399	13088150	3361720	0	4597382	8576017	167743909	8085260	15228220	910439	34537608	2251034	106731348
EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.bam	22573555	10112774	10003930	2456851	0	3692163	6420611	128026299	5689722	11970270	671794	25906277	2537937	81250299
EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.bam	13762658	6084804	6118468	1559385	1	2053760	4031044	79983322	3855731	7250942	431899	16319796	1321843	50803111