/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-43_S40_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-43_S40_L005_R2_001_val_2.fq.gz
Data processed at 20:04 on 2019-08-12
Alignment Stats
Sequence pairs analysed in total
22573555
Paired-end alignments with a unique best hit
10112774
Pairs without alignments under any condition
10003930
Pairs that did not map uniquely
2456851
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
291124282
Methylated C's in CpG context
12587981
Methylated C's in CHG context
1494744
Methylated C's in CHH context
5077384
Methylated C's in Unknown context
67963
Unmethylated C's in CpG context
28303550
Unmethylated C's in CHG context
60291324
Unmethylated C's in CHH context
183369299
Unmethylated C's in Unknown context
592883
Percentage methylation (CpG context)
30.8%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
2.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5003413
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5109361
original bottom strand
Deduplication
Alignments analysed
10112774
Unique alignments
6420611
Duplicates removed
3692163
Duplicated alignments were found at 2223544 different positions