/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-42_S39_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-42_S39_L005_R2_001_val_2.fq.gz
Data processed at 20:04 on 2019-08-12
Alignment Stats
Sequence pairs analysed in total
29623269
Paired-end alignments with a unique best hit
13173399
Pairs without alignments under any condition
13088150
Pairs that did not map uniquely
3361720
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
371864315
Methylated C's in CpG context
17401813
Methylated C's in CHG context
2029825
Methylated C's in CHH context
4531660
Methylated C's in Unknown context
68790
Unmethylated C's in CpG context
35533244
Unmethylated C's in CHG context
78200824
Unmethylated C's in CHH context
234166949
Unmethylated C's in Unknown context
781521
Percentage methylation (CpG context)
32.9%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6518218
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6655181
original bottom strand
Deduplication
Alignments analysed
13173399
Unique alignments
8576017
Duplicates removed
4597382
Duplicated alignments were found at 2730000 different positions