/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-143_S37_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-143_S37_L005_R2_001_val_2.fq.gz
Data processed at 20:04 on 2019-08-12
Alignment Stats
Sequence pairs analysed in total
21160872
Paired-end alignments with a unique best hit
9316819
Pairs without alignments under any condition
10036514
Pairs that did not map uniquely
1807539
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
288290011
Methylated C's in CpG context
10342749
Methylated C's in CHG context
1387455
Methylated C's in CHH context
2413979
Methylated C's in Unknown context
44158
Unmethylated C's in CpG context
29588909
Unmethylated C's in CHG context
58728884
Unmethylated C's in CHH context
185828035
Unmethylated C's in Unknown context
610790
Percentage methylation (CpG context)
25.9%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4624000
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4692818
original bottom strand
Deduplication
Alignments analysed
9316818
Unique alignments
7896079
Duplicates removed
1420739
Duplicated alignments were found at 811691 different positions