CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 253190 347231 42.17 600421 2 233839 373664 38.49 607503 3 201726 320785 38.61 522511 4 196689 237401 45.31 434090 5 185876 195184 48.78 381060 6 185634 165043 52.94 350677 7 203880 159193 56.15 363073 8 92423 183063 33.55 275486 9 82249 168033 32.86 250282 10 82027 161112 33.74 243139 11 84344 164005 33.96 248349 12 80929 169761 32.28 250690 13 79950 174311 31.44 254261 14 75379 172552 30.40 247931 15 73272 175076 29.50 248348 16 67241 171500 28.16 238741 17 63305 166046 27.60 229351 18 64394 167284 27.79 231678 19 63947 170444 27.28 234391 20 65417 172184 27.53 237601 21 66029 173864 27.52 239893 22 64626 172098 27.30 236724 23 64148 170254 27.37 234402 24 62961 170251 27.00 233212 25 61507 168375 26.76 229882 26 62102 165878 27.24 227980 27 61812 170117 26.65 231929 28 64493 167751 27.77 232244 29 62182 173980 26.33 236162 30 61413 170407 26.49 231820 31 62148 165934 27.25 228082 32 60230 161855 27.12 222085 33 60899 162009 27.32 222908 34 61625 161427 27.63 223052 35 59969 160122 27.25 220091 36 59223 161590 26.82 220813 37 58145 158917 26.79 217062 38 57466 158841 26.57 216307 39 59474 161188 26.95 220662 40 60109 158662 27.48 218771 41 59799 159120 27.32 218919 42 59840 161248 27.07 221088 43 59254 159012 27.15 218266 44 58722 156710 27.26 215432 45 59439 156425 27.54 215864 46 61105 157509 27.95 218614 47 60123 155235 27.92 215358 48 59366 155189 27.67 214555 49 60204 154567 28.03 214771 50 57702 158453 26.69 216155 51 58328 156508 27.15 214836 52 57557 163108 26.08 220665 53 57059 154475 26.97 211534 54 55507 151294 26.84 206801 55 54903 146719 27.23 201622 56 54630 144604 27.42 199234 57 54893 146281 27.29 201174 58 54568 145424 27.29 199992 59 54951 145006 27.48 199957 60 53015 145695 26.68 198710 61 53967 143064 27.39 197031 62 52165 145736 26.36 197901 63 51846 142410 26.69 194256 64 51520 142454 26.56 193974 65 52018 138490 27.30 190508 66 52394 139527 27.30 191921 67 51839 137711 27.35 189550 68 51202 136138 27.33 187340 69 50321 134436 27.24 184757 70 49463 134372 26.91 183835 71 48488 133956 26.58 182444 72 48405 132550 26.75 180955 73 47893 129757 26.96 177650 74 46904 128778 26.70 175682 75 45806 127367 26.45 173173 76 46040 126238 26.72 172278 77 46314 125391 26.97 171705 78 45949 126406 26.66 172355 79 45454 123142 26.96 168596 80 44548 123073 26.58 167621 81 43797 122771 26.29 166568 82 43240 120256 26.45 163496 83 43567 121677 26.37 165244 84 43886 121523 26.53 165409 85 43320 120160 26.50 163480 86 41862 117519 26.27 159381 87 41184 116374 26.14 157558 88 41023 116146 26.10 157169 89 40089 114292 25.97 154381 90 40646 114032 26.28 154678 91 40007 113069 26.14 153076 92 38949 111501 25.89 150450 93 38969 112014 25.81 150983 94 39119 109322 26.35 148441 95 38638 108783 26.21 147421 96 38734 112116 25.68 150850 97 37483 106816 25.98 144299 98 34389 99813 25.62 134202 99 27173 78178 25.79 105351 100 36321 100120 26.62 136441 101 33277 97933 25.36 131210 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 336298 338034 49.87 674332 2 200120 303711 39.72 503831 3 79713 300350 20.97 380063 4 35860 310461 10.35 346321 5 21204 290657 6.80 311861 6 17387 281326 5.82 298713 7 12246 359709 3.29 371955 8 4920 388762 1.25 393682 9 3845 360495 1.06 364340 10 3794 344331 1.09 348125 11 3789 347717 1.08 351506 12 3684 347098 1.05 350782 13 3244 333382 0.96 336626 14 2913 333089 0.87 336002 15 2875 340194 0.84 343069 16 2606 342929 0.75 345535 17 2524 337584 0.74 340108 18 2410 336626 0.71 339036 19 2349 335371 0.70 337720 20 2475 351446 0.70 353921 21 2546 358110 0.71 360656 22 2496 354186 0.70 356682 23 2571 358508 0.71 361079 24 2486 359023 0.69 361509 25 2499 349470 0.71 351969 26 2711 352446 0.76 355157 27 2663 354252 0.75 356915 28 2558 352225 0.72 354783 29 2726 356656 0.76 359382 30 2642 359278 0.73 361920 31 2676 351937 0.75 354613 32 2751 353835 0.77 356586 33 2731 352844 0.77 355575 34 2622 346046 0.75 348668 35 2770 349030 0.79 351800 36 2779 348474 0.79 351253 37 2802 341050 0.81 343852 38 2831 345381 0.81 348212 39 2797 341561 0.81 344358 40 2741 340060 0.80 342801 41 2811 337937 0.82 340748 42 2822 340192 0.82 343014 43 2810 333763 0.83 336573 44 2792 339509 0.82 342301 45 2879 339016 0.84 341895 46 2963 333861 0.88 336824 47 2998 334570 0.89 337568 48 2945 337643 0.86 340588 49 2851 331606 0.85 334457 50 2986 331430 0.89 334416 51 2959 332999 0.88 335958 52 2983 331623 0.89 334606 53 2988 328174 0.90 331162 54 3106 329065 0.94 332171 55 2884 323596 0.88 326480 56 2969 326122 0.90 329091 57 2927 323686 0.90 326613 58 3400 319939 1.05 323339 59 3094 322034 0.95 325128 60 3064 321538 0.94 324602 61 3164 320246 0.98 323410 62 3104 321191 0.96 324295 63 3018 316344 0.95 319362 64 3093 316942 0.97 320035 65 3264 314293 1.03 317557 66 3141 308265 1.01 311406 67 3056 300110 1.01 303166 68 3094 303693 1.01 306787 69 3076 301113 1.01 304189 70 3082 296251 1.03 299333 71 2896 295344 0.97 298240 72 3121 293226 1.05 296347 73 2931 289987 1.00 292918 74 3110 285281 1.08 288391 75 2978 286899 1.03 289877 76 2765 279495 0.98 282260 77 2968 280706 1.05 283674 78 2922 276169 1.05 279091 79 2927 272453 1.06 275380 80 2841 270845 1.04 273686 81 2870 266820 1.06 269690 82 2670 263402 1.00 266072 83 2800 267572 1.04 270372 84 2762 266993 1.02 269755 85 2797 262342 1.05 265139 86 2941 263793 1.10 266734 87 2772 262492 1.04 265264 88 2787 258485 1.07 261272 89 2868 256018 1.11 258886 90 2837 256109 1.10 258946 91 2840 250768 1.12 253608 92 2803 251398 1.10 254201 93 3089 248946 1.23 252035 94 3016 244193 1.22 247209 95 2977 243352 1.21 246329 96 3123 240660 1.28 243783 97 2794 219399 1.26 222193 98 2465 200594 1.21 203059 99 1628 130403 1.23 132031 100 1810 131236 1.36 133046 101 3920 216845 1.78 220765 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 270720 377376 41.77 648096 2 120023 400609 23.05 520632 3 52929 527542 9.12 580471 4 42605 569374 6.96 611979 5 37521 691622 5.15 729143 6 29077 762625 3.67 791702 7 27050 988077 2.66 1015127 8 14371 1063114 1.33 1077485 9 11050 974081 1.12 985131 10 10715 956502 1.11 967217 11 11599 957523 1.20 969122 12 10291 979152 1.04 989443 13 11042 1002974 1.09 1014016 14 11217 1030933 1.08 1042150 15 10150 1059278 0.95 1069428 16 9924 1081009 0.91 1090933 17 10770 1083781 0.98 1094551 18 9917 1125458 0.87 1135375 19 9835 1149896 0.85 1159731 20 10727 1183530 0.90 1194257 21 9942 1188847 0.83 1198789 22 10512 1188156 0.88 1198668 23 11295 1191617 0.94 1202912 24 9930 1190348 0.83 1200278 25 10521 1199373 0.87 1209894 26 11277 1206197 0.93 1217474 27 10425 1207765 0.86 1218190 28 10224 1208232 0.84 1218456 29 11245 1198205 0.93 1209450 30 10127 1184628 0.85 1194755 31 10314 1166158 0.88 1176472 32 11018 1173241 0.93 1184259 33 10100 1167575 0.86 1177675 34 10662 1173376 0.90 1184038 35 10944 1164727 0.93 1175671 36 10338 1170562 0.88 1180900 37 10160 1162710 0.87 1172870 38 11055 1165281 0.94 1176336 39 9999 1154088 0.86 1164087 40 10536 1157476 0.90 1168012 41 11350 1158604 0.97 1169954 42 10685 1166612 0.91 1177297 43 10706 1150582 0.92 1161288 44 11082 1153183 0.95 1164265 45 10313 1139858 0.90 1150171 46 10512 1139234 0.91 1149746 47 10879 1129497 0.95 1140376 48 10375 1128919 0.91 1139294 49 10258 1110267 0.92 1120525 50 10672 1103646 0.96 1114318 51 9813 1091628 0.89 1101441 52 10017 1086456 0.91 1096473 53 10518 1075916 0.97 1086434 54 9971 1076245 0.92 1086216 55 9988 1077865 0.92 1087853 56 10625 1071960 0.98 1082585 57 9591 1082888 0.88 1092479 58 11298 1070467 1.04 1081765 59 10651 1080232 0.98 1090883 60 9770 1059027 0.91 1068797 61 10051 1054692 0.94 1064743 62 10328 1044849 0.98 1055177 63 9689 1031539 0.93 1041228 64 10269 1025107 0.99 1035376 65 10335 1025331 1.00 1035666 66 9589 1017356 0.93 1026945 67 9711 1010028 0.95 1019739 68 10201 1002977 1.01 1013178 69 9272 995406 0.92 1004678 70 9394 992356 0.94 1001750 71 10149 982812 1.02 992961 72 9354 977504 0.95 986858 73 9813 965156 1.01 974969 74 9741 961140 1.00 970881 75 8874 954610 0.92 963484 76 9176 948543 0.96 957719 77 9560 940123 1.01 949683 78 8827 933683 0.94 942510 79 8697 927460 0.93 936157 80 9486 919910 1.02 929396 81 8575 906414 0.94 914989 82 8814 898581 0.97 907395 83 8993 898662 0.99 907655 84 8473 886455 0.95 894928 85 8467 875998 0.96 884465 86 8849 869206 1.01 878055 87 8129 866659 0.93 874788 88 8271 859875 0.95 868146 89 8751 851541 1.02 860292 90 7996 846743 0.94 854739 91 8136 834407 0.97 842543 92 8510 833088 1.01 841598 93 7992 826482 0.96 834474 94 8016 814839 0.97 822855 95 8405 805763 1.03 814168 96 7707 788999 0.97 796706 97 7726 768522 1.00 776248 98 7581 713423 1.05 721004 99 5168 490259 1.04 495427 100 5381 437276 1.22 442657 101 7921 717714 1.09 725635 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 117896 141157 45.51 259053 2 103014 125878 45.01 228892 3 110191 140401 43.97 250592 4 102723 156334 39.65 259057 5 45225 194201 18.89 239426 6 26520 105379 20.11 131899 7 24468 113575 17.72 138043 8 25835 104535 19.82 130370 9 23234 93944 19.83 117178 10 25931 103346 20.06 129277 11 27330 99251 21.59 126581 12 27333 95680 22.22 123013 13 26907 93462 22.35 120369 14 27767 93371 22.92 121138 15 27498 87398 23.93 114896 16 26743 85112 23.91 111855 17 31671 94066 25.19 125737 18 30715 88552 25.75 119267 19 28748 84421 25.40 113169 20 27329 82994 24.77 110323 21 29080 81759 26.24 110839 22 28485 83362 25.47 111847 23 27094 80206 25.25 107300 24 25045 76057 24.77 101102 25 28155 81660 25.64 109815 26 26008 77041 25.24 103049 27 27947 77832 26.42 105779 28 26656 76327 25.88 102983 29 27238 78108 25.86 105346 30 25715 73017 26.05 98732 31 24459 73595 24.94 98054 32 24249 69414 25.89 93663 33 25369 70398 26.49 95767 34 25284 71864 26.03 97148 35 30674 76383 28.65 107057 36 26518 70368 27.37 96886 37 26014 71475 26.68 97489 38 23626 68163 25.74 91789 39 24939 68075 26.81 93014 40 25862 68516 27.40 94378 41 23427 66463 26.06 89890 42 23675 67031 26.10 90706 43 24086 67074 26.42 91160 44 22598 65384 25.68 87982 45 26868 68347 28.22 95215 46 21989 60622 26.62 82611 47 22382 60908 26.87 83290 48 21910 60730 26.51 82640 49 21442 60784 26.08 82226 50 20581 58556 26.01 79137 51 20666 56983 26.61 77649 52 20602 58913 25.91 79515 53 21177 56640 27.21 77817 54 20691 57043 26.62 77734 55 20490 57613 26.23 78103 56 19414 54804 26.16 74218 57 19998 54477 26.85 74475 58 19526 54169 26.50 73695 59 19326 51759 27.19 71085 60 19875 52668 27.40 72543 61 17588 50979 25.65 68567 62 17652 51314 25.60 68966 63 18795 50636 27.07 69431 64 18163 49849 26.71 68012 65 17577 47326 27.08 64903 66 18275 48075 27.54 66350 67 16852 48601 25.75 65453 68 18350 49265 27.14 67615 69 16805 45794 26.85 62599 70 16332 46581 25.96 62913 71 16898 44790 27.39 61688 72 16190 43901 26.94 60091 73 16421 44861 26.80 61282 74 14934 43111 25.73 58045 75 14688 42083 25.87 56771 76 15081 41763 26.53 56844 77 14862 41437 26.40 56299 78 14972 41670 26.43 56642 79 14479 41356 25.93 55835 80 14087 40362 25.87 54449 81 14091 40064 26.02 54155 82 14068 40076 25.98 54144 83 13876 38380 26.55 52256 84 15012 40569 27.01 55581 85 13340 38595 25.69 51935 86 13108 37770 25.76 50878 87 13069 36648 26.29 49717 88 12894 36529 26.09 49423 89 13604 36698 27.04 50302 90 13540 35892 27.39 49432 91 12849 35480 26.59 48329 92 12391 35151 26.06 47542 93 12430 34487 26.49 46917 94 12133 34789 25.86 46922 95 12487 34405 26.63 46892 96 12322 34070 26.56 46392 97 12809 34813 26.90 47622 98 11735 30918 27.51 42653 99 10134 0 100.00 10134 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 36820 195075 15.88 231895 2 37062 196284 15.88 233346 3 34758 199169 14.86 233927 4 36901 203396 15.36 240297 5 2690 375266 0.71 377956 6 2105 457481 0.46 459586 7 1266 248106 0.51 249372 8 1331 264188 0.50 265519 9 1149 226263 0.51 227412 10 1167 216413 0.54 217580 11 1508 274650 0.55 276158 12 1233 228325 0.54 229558 13 1211 226288 0.53 227499 14 1219 219234 0.55 220453 15 1146 206534 0.55 207680 16 1127 195129 0.57 196256 17 1211 209076 0.58 210287 18 1253 186982 0.67 188235 19 1187 183618 0.64 184805 20 1061 180637 0.58 181698 21 1260 175528 0.71 176788 22 1171 187210 0.62 188381 23 1099 186787 0.58 187886 24 1074 170057 0.63 171131 25 1018 174558 0.58 175576 26 1106 179224 0.61 180330 27 1076 168723 0.63 169799 28 924 159796 0.57 160720 29 1032 169216 0.61 170248 30 969 167709 0.57 168678 31 971 158953 0.61 159924 32 968 162043 0.59 163011 33 1039 183624 0.56 184663 34 922 158600 0.58 159522 35 994 162325 0.61 163319 36 971 163358 0.59 164329 37 882 149689 0.59 150571 38 943 153891 0.61 154834 39 877 146558 0.59 147435 40 906 146426 0.61 147332 41 867 142952 0.60 143819 42 895 135330 0.66 136225 43 863 136909 0.63 137772 44 857 139259 0.61 140116 45 843 131108 0.64 131951 46 781 131877 0.59 132658 47 840 135838 0.61 136678 48 866 130233 0.66 131099 49 754 131175 0.57 131929 50 799 128587 0.62 129386 51 776 121876 0.63 122652 52 794 121817 0.65 122611 53 848 135878 0.62 136726 54 809 125094 0.64 125903 55 773 120499 0.64 121272 56 777 123043 0.63 123820 57 802 116531 0.68 117333 58 754 113609 0.66 114363 59 735 118516 0.62 119251 60 753 113749 0.66 114502 61 741 114463 0.64 115204 62 766 113888 0.67 114654 63 757 112871 0.67 113628 64 669 107569 0.62 108238 65 674 110149 0.61 110823 66 701 104911 0.66 105612 67 718 110057 0.65 110775 68 651 107273 0.60 107924 69 636 106796 0.59 107432 70 694 105823 0.65 106517 71 647 106119 0.61 106766 72 630 100764 0.62 101394 73 597 98958 0.60 99555 74 605 102570 0.59 103175 75 618 98830 0.62 99448 76 547 94193 0.58 94740 77 578 98596 0.58 99174 78 583 92343 0.63 92926 79 617 92809 0.66 93426 80 542 90810 0.59 91352 81 531 88292 0.60 88823 82 522 86418 0.60 86940 83 565 87813 0.64 88378 84 497 84798 0.58 85295 85 531 89896 0.59 90427 86 488 84171 0.58 84659 87 524 83104 0.63 83628 88 499 80060 0.62 80559 89 538 83405 0.64 83943 90 606 81526 0.74 82132 91 554 82868 0.66 83422 92 513 80198 0.64 80711 93 480 77591 0.61 78071 94 491 76367 0.64 76858 95 474 78421 0.60 78895 96 490 74797 0.65 75287 97 472 74005 0.63 74477 98 381 70977 0.53 71358 99 312 0 100.00 312 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 48283 266754 15.33 315037 2 39121 219171 15.15 258292 3 40145 228509 14.94 268654 4 39470 221133 15.15 260603 5 4287 426594 0.99 430881 6 4328 594772 0.72 599100 7 4979 801803 0.62 806782 8 5150 790009 0.65 795159 9 5139 743706 0.69 748845 10 5154 764001 0.67 769155 11 5070 747174 0.67 752244 12 5182 699104 0.74 704286 13 5037 718082 0.70 723119 14 5121 719789 0.71 724910 15 5061 730678 0.69 735739 16 4829 698486 0.69 703315 17 5080 695259 0.73 700339 18 5056 689936 0.73 694992 19 4726 648300 0.72 653026 20 4725 675227 0.69 679952 21 4712 647896 0.72 652608 22 4541 627704 0.72 632245 23 4317 618314 0.69 622631 24 4311 595893 0.72 600204 25 4633 595665 0.77 600298 26 4455 591825 0.75 596280 27 4657 624126 0.74 628783 28 4387 596806 0.73 601193 29 4237 583993 0.72 588230 30 4299 568748 0.75 573047 31 4209 564748 0.74 568957 32 4002 554329 0.72 558331 33 4051 546616 0.74 550667 34 4136 539113 0.76 543249 35 4731 554898 0.85 559629 36 4074 547659 0.74 551733 37 4084 544966 0.74 549050 38 4138 566119 0.73 570257 39 4081 523420 0.77 527501 40 3905 541327 0.72 545232 41 3783 516939 0.73 520722 42 3881 522964 0.74 526845 43 3808 502731 0.75 506539 44 3776 500143 0.75 503919 45 3997 501157 0.79 505154 46 3864 506648 0.76 510512 47 3540 497525 0.71 501065 48 3733 487782 0.76 491515 49 3716 493711 0.75 497427 50 3542 486070 0.72 489612 51 3572 475272 0.75 478844 52 3355 453006 0.74 456361 53 3396 452113 0.75 455509 54 3257 443441 0.73 446698 55 3341 452380 0.73 455721 56 3113 440829 0.70 443942 57 3244 451308 0.71 454552 58 3127 437427 0.71 440554 59 3133 422627 0.74 425760 60 3149 434147 0.72 437296 61 3121 420311 0.74 423432 62 3124 416353 0.74 419477 63 3042 414822 0.73 417864 64 2908 400353 0.72 403261 65 2896 402487 0.71 405383 66 2862 389230 0.73 392092 67 2784 389687 0.71 392471 68 2926 401404 0.72 404330 69 2837 388178 0.73 391015 70 2810 376345 0.74 379155 71 2712 375502 0.72 378214 72 2695 371926 0.72 374621 73 2764 369446 0.74 372210 74 2578 370432 0.69 373010 75 2626 366060 0.71 368686 76 2601 355219 0.73 357820 77 2581 351562 0.73 354143 78 2561 352309 0.72 354870 79 2550 355447 0.71 357997 80 2533 342930 0.73 345463 81 2559 341390 0.74 343949 82 2456 337905 0.72 340361 83 2455 334159 0.73 336614 84 2542 331507 0.76 334049 85 2388 328026 0.72 330414 86 2364 325768 0.72 328132 87 2334 321672 0.72 324006 88 2263 313735 0.72 315998 89 2333 311295 0.74 313628 90 2349 310499 0.75 312848 91 2291 308063 0.74 310354 92 2242 305343 0.73 307585 93 2103 301393 0.69 303496 94 2100 295710 0.71 297810 95 2140 293532 0.72 295672 96 2063 285467 0.72 287530 97 1971 285436 0.69 287407 98 1733 270003 0.64 271736 99 1243 0 100.00 1243