EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8450079 lines in total Total number of methylation call strings processed: 16900158 Final Cytosine Methylation Report ================================= Total number of C's analysed: 196938082 Total methylated C's in CpG context: 7564205 Total methylated C's in CHG context: 967557 Total methylated C's in CHH context: 1694338 Total C to T conversions in CpG context: 19544907 Total C to T conversions in CHG context: 39233900 Total C to T conversions in CHH context: 127933175 C methylated in CpG context: 27.9% C methylated in CHG context: 2.4% C methylated in CHH context: 1.3%