EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9470106 lines in total Total number of methylation call strings processed: 18940212 Final Cytosine Methylation Report ================================= Total number of C's analysed: 217946429 Total methylated C's in CpG context: 8187042 Total methylated C's in CHG context: 1062536 Total methylated C's in CHH context: 1832611 Total C to T conversions in CpG context: 21761145 Total C to T conversions in CHG context: 43433409 Total C to T conversions in CHH context: 141669686 C methylated in CpG context: 27.3% C methylated in CHG context: 2.4% C methylated in CHH context: 1.3%