CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 199552 328255 37.81 527807 2 183193 347996 34.49 531189 3 163430 300737 35.21 464167 4 164173 221904 42.52 386077 5 154910 184230 45.68 339140 6 153643 157290 49.41 310933 7 169011 151485 52.73 320496 8 79782 174067 31.43 253849 9 71483 160081 30.87 231564 10 72269 151995 32.22 224264 11 75219 154829 32.70 230048 12 71995 159912 31.04 231907 13 70748 164088 30.13 234836 14 65795 161688 28.92 227483 15 63340 163594 27.91 226934 16 58572 159419 26.87 217991 17 54301 155256 25.91 209557 18 56344 156733 26.44 213077 19 55258 159599 25.72 214857 20 56228 160781 25.91 217009 21 57205 163550 25.91 220755 22 55581 160937 25.67 216518 23 55347 159623 25.75 214970 24 54496 158798 25.55 213294 25 52910 157726 25.12 210636 26 53018 155038 25.48 208056 27 53311 159858 25.01 213169 28 54947 157069 25.92 212016 29 52956 162857 24.54 215813 30 52143 157952 24.82 210095 31 53202 156217 25.40 209419 32 51778 152116 25.39 203894 33 52499 152850 25.57 205349 34 53592 152226 26.04 205818 35 51939 150799 25.62 202738 36 51517 152902 25.20 204419 37 50142 150060 25.05 200202 38 49562 149163 24.94 198725 39 50851 152196 25.04 203047 40 51940 149894 25.73 201834 41 51822 149985 25.68 201807 42 51803 153021 25.29 204824 43 51321 151420 25.31 202741 44 50363 149519 25.20 199882 45 51447 148559 25.72 200006 46 52549 150212 25.92 202761 47 52122 147467 26.11 199589 48 51707 148135 25.87 199842 49 52545 147836 26.22 200381 50 50800 150579 25.23 201379 51 51403 149335 25.61 200738 52 51266 155723 24.77 206989 53 49949 147834 25.25 197783 54 49131 145737 25.21 194868 55 48915 141669 25.67 190584 56 48472 139530 25.78 188002 57 49186 141201 25.83 190387 58 48827 140995 25.72 189822 59 49145 141251 25.81 190396 60 47567 140674 25.27 188241 61 48460 139928 25.72 188388 62 47335 141942 25.01 189277 63 46599 139673 25.02 186272 64 46848 139512 25.14 186360 65 46982 137051 25.53 184033 66 47247 137774 25.54 185021 67 47156 135465 25.82 182621 68 46044 134511 25.50 180555 69 45331 133910 25.29 179241 70 45387 133555 25.36 178942 71 44278 133152 24.96 177430 72 44444 131589 25.25 176033 73 44003 130140 25.27 174143 74 43454 128564 25.26 172018 75 42706 127789 25.05 170495 76 42719 126043 25.31 168762 77 43568 126076 25.68 169644 78 42827 126004 25.37 168831 79 41917 124927 25.12 166844 80 41203 124301 24.90 165504 81 40567 123426 24.74 163993 82 39555 122207 24.45 161762 83 40448 122930 24.76 163378 84 40689 122899 24.87 163588 85 40339 122617 24.75 162956 86 39710 119713 24.91 159423 87 38415 118774 24.44 157189 88 38562 118098 24.62 156660 89 38160 117478 24.52 155638 90 38069 116909 24.56 154978 91 37951 114924 24.82 152875 92 37048 113898 24.54 150946 93 36776 115112 24.21 151888 94 37182 112722 24.80 149904 95 36496 112303 24.53 148799 96 36701 114945 24.20 151646 97 35637 109387 24.57 145024 98 33097 103046 24.31 136143 99 25715 80758 24.15 106473 100 33950 104219 24.57 138169 101 30906 100749 23.47 131655 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 287819 313533 47.86 601352 2 169576 275517 38.10 445093 3 65649 271845 19.45 337494 4 28343 284280 9.07 312623 5 15832 265444 5.63 281276 6 12914 259166 4.75 272080 7 9989 328941 2.95 338930 8 4237 354096 1.18 358333 9 3573 326543 1.08 330116 10 3438 310304 1.10 313742 11 3544 312256 1.12 315800 12 3559 311616 1.13 315175 13 3045 299251 1.01 302296 14 2674 299134 0.89 301808 15 2483 304402 0.81 306885 16 2411 305588 0.78 307999 17 2254 301576 0.74 303830 18 2237 300766 0.74 303003 19 2104 300295 0.70 302399 20 2235 315097 0.70 317332 21 2165 319375 0.67 321540 22 2294 317767 0.72 320061 23 2230 320000 0.69 322230 24 2245 322328 0.69 324573 25 2160 311297 0.69 313457 26 2410 316503 0.76 318913 27 2225 317144 0.70 319369 28 2159 316010 0.68 318169 29 2191 318969 0.68 321160 30 2160 322645 0.67 324805 31 2266 316604 0.71 318870 32 2193 316509 0.69 318702 33 2350 318101 0.73 320451 34 2282 312619 0.72 314901 35 2289 313986 0.72 316275 36 2329 314369 0.74 316698 37 2341 308078 0.75 310419 38 2433 312404 0.77 314837 39 2351 309924 0.75 312275 40 2283 306681 0.74 308964 41 2320 308186 0.75 310506 42 2428 308770 0.78 311198 43 2379 305719 0.77 308098 44 2347 309855 0.75 312202 45 2428 309209 0.78 311637 46 2311 305548 0.75 307859 47 2472 305104 0.80 307576 48 2438 308322 0.78 310760 49 2371 304233 0.77 306604 50 2437 304517 0.79 306954 51 2520 306110 0.82 308630 52 2361 304444 0.77 306805 53 2528 302964 0.83 305492 54 2619 304524 0.85 307143 55 2541 300947 0.84 303488 56 2551 303076 0.83 305627 57 2483 301016 0.82 303499 58 2810 298174 0.93 300984 59 2589 300238 0.85 302827 60 2656 301914 0.87 304570 61 2624 298451 0.87 301075 62 2677 301087 0.88 303764 63 2605 296301 0.87 298906 64 2751 297105 0.92 299856 65 2844 294893 0.96 297737 66 2736 290716 0.93 293452 67 2760 283237 0.97 285997 68 2698 285652 0.94 288350 69 2674 285269 0.93 287943 70 2645 282333 0.93 284978 71 2698 280799 0.95 283497 72 2596 279173 0.92 281769 73 2633 274968 0.95 277601 74 2686 274422 0.97 277108 75 2637 274635 0.95 277272 76 2661 268128 0.98 270789 77 2643 269827 0.97 272470 78 2547 266494 0.95 269041 79 2510 261989 0.95 264499 80 2538 260732 0.96 263270 81 2578 257405 0.99 259983 82 2574 255607 1.00 258181 83 2612 259338 1.00 261950 84 2608 259589 0.99 262197 85 2644 254526 1.03 257170 86 2655 257969 1.02 260624 87 2634 256454 1.02 259088 88 2619 252437 1.03 255056 89 2632 249519 1.04 252151 90 2606 250244 1.03 252850 91 2669 246678 1.07 249347 92 2769 247502 1.11 250271 93 2916 245001 1.18 247917 94 2758 240863 1.13 243621 95 2740 239290 1.13 242030 96 2800 237668 1.16 240468 97 2583 218056 1.17 220639 98 2434 199540 1.21 201974 99 1563 129546 1.19 131109 100 1715 131274 1.29 132989 101 3584 213734 1.65 217318 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 238672 345426 40.86 584098 2 105897 363982 22.54 469879 3 45574 478488 8.70 524062 4 35235 521465 6.33 556700 5 30640 624431 4.68 655071 6 23974 687841 3.37 711815 7 23005 880609 2.55 903614 8 12367 945425 1.29 957792 9 9719 865237 1.11 874956 10 9400 847746 1.10 857146 11 10034 848129 1.17 858163 12 9105 868673 1.04 877778 13 9629 890173 1.07 899802 14 9806 914646 1.06 924452 15 8785 941130 0.92 949915 16 8700 963436 0.89 972136 17 9366 969313 0.96 978679 18 8749 1005610 0.86 1014359 19 8629 1030910 0.83 1039539 20 9552 1060859 0.89 1070411 21 8786 1066883 0.82 1075669 22 8856 1068953 0.82 1077809 23 9528 1071408 0.88 1080936 24 9092 1073826 0.84 1082918 25 9124 1080815 0.84 1089939 26 9887 1089599 0.90 1099486 27 9054 1092051 0.82 1101105 28 8899 1091676 0.81 1100575 29 9547 1087776 0.87 1097323 30 8817 1076138 0.81 1084955 31 8881 1061152 0.83 1070033 32 9566 1070179 0.89 1079745 33 8759 1064128 0.82 1072887 34 9382 1069309 0.87 1078691 35 9702 1058574 0.91 1068276 36 9044 1066754 0.84 1075798 37 8677 1061702 0.81 1070379 38 9620 1064646 0.90 1074266 39 8875 1055971 0.83 1064846 40 9041 1060597 0.85 1069638 41 9718 1062825 0.91 1072543 42 9238 1070578 0.86 1079816 43 9204 1055116 0.86 1064320 44 9511 1061221 0.89 1070732 45 9138 1049674 0.86 1058812 46 9128 1051446 0.86 1060574 47 9636 1046974 0.91 1056610 48 8985 1047319 0.85 1056304 49 8914 1032636 0.86 1041550 50 9368 1028865 0.90 1038233 51 8638 1019137 0.84 1027775 52 8831 1015611 0.86 1024442 53 9521 1008322 0.94 1017843 54 8706 1009138 0.86 1017844 55 9093 1010116 0.89 1019209 56 9428 1006506 0.93 1015934 57 8768 1018942 0.85 1027710 58 9997 1005360 0.98 1015357 59 9742 1020768 0.95 1030510 60 8565 1002245 0.85 1010810 61 8900 999398 0.88 1008298 62 9243 991830 0.92 1001073 63 8716 982966 0.88 991682 64 9002 976238 0.91 985240 65 9269 976269 0.94 985538 66 8675 971138 0.89 979813 67 8677 967760 0.89 976437 68 9155 964069 0.94 973224 69 8571 957805 0.89 966376 70 8615 955862 0.89 964477 71 8964 949324 0.94 958288 72 8525 945530 0.89 954055 73 9017 937082 0.95 946099 74 8890 933373 0.94 942263 75 8391 930017 0.89 938408 76 8452 926309 0.90 934761 77 8941 918961 0.96 927902 78 8051 910440 0.88 918491 79 8067 907793 0.88 915860 80 8401 900602 0.92 909003 81 8195 892035 0.91 900230 82 8193 885223 0.92 893416 83 8522 888738 0.95 897260 84 7954 877469 0.90 885423 85 7847 867738 0.90 875585 86 8138 860750 0.94 868888 87 7727 857518 0.89 865245 88 7693 854143 0.89 861836 89 8083 844776 0.95 852859 90 7611 842851 0.89 850462 91 7717 832596 0.92 840313 92 8235 832124 0.98 840359 93 7496 822404 0.90 829900 94 7732 815429 0.94 823161 95 8169 805531 1.00 813700 96 7584 789813 0.95 797397 97 7353 769552 0.95 776905 98 7424 715650 1.03 723074 99 4861 492915 0.98 497776 100 5055 441677 1.13 446732 101 7633 720666 1.05 728299 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 110499 144615 43.31 255114 2 97973 130134 42.95 228107 3 107529 146428 42.34 253957 4 102100 163841 38.39 265941 5 44178 204179 17.79 248357 6 25400 109725 18.80 135125 7 23622 117872 16.69 141494 8 25103 109883 18.60 134986 9 22486 98559 18.58 121045 10 24904 107609 18.79 132513 11 26772 104801 20.35 131573 12 26161 101099 20.56 127260 13 26480 99130 21.08 125610 14 27912 99661 21.88 127573 15 27100 92363 22.68 119463 16 26365 90568 22.55 116933 17 31111 99286 23.86 130397 18 30324 94364 24.32 124688 19 28966 90174 24.31 119140 20 27471 88732 23.64 116203 21 28962 87738 24.82 116700 22 28247 88999 24.09 117246 23 26648 85958 23.66 112606 24 25499 80983 23.95 106482 25 28041 87636 24.24 115677 26 25768 83236 23.64 109004 27 27777 83724 24.91 111501 28 26495 80994 24.65 107489 29 26807 83823 24.23 110630 30 25518 77896 24.68 103414 31 24694 78601 23.91 103295 32 24018 74847 24.29 98865 33 26002 75540 25.61 101542 34 25418 77820 24.62 103238 35 29840 82009 26.68 111849 36 26255 75247 25.87 101502 37 25914 77080 25.16 102994 38 23423 74207 23.99 97630 39 24665 72860 25.29 97525 40 25696 74036 25.77 99732 41 23750 70838 25.11 94588 42 23773 72281 24.75 96054 43 24055 71580 25.15 95635 44 22840 69443 24.75 92283 45 26849 73575 26.74 100424 46 22441 65504 25.52 87945 47 22643 66131 25.51 88774 48 22100 65881 25.12 87981 49 21569 65863 24.67 87432 50 20603 63747 24.43 84350 51 20661 62489 24.85 83150 52 20675 63624 24.53 84299 53 21219 61595 25.62 82814 54 20870 61517 25.33 82387 55 20496 62125 24.81 82621 56 19929 60077 24.91 80006 57 20189 58668 25.60 78857 58 19886 58784 25.28 78670 59 19571 56723 25.65 76294 60 20040 57823 25.74 77863 61 17712 55188 24.30 72900 62 17848 55175 24.44 73023 63 19166 54516 26.01 73682 64 18324 54189 25.27 72513 65 17572 51440 25.46 69012 66 18464 52793 25.91 71257 67 17267 52681 24.69 69948 68 18131 53153 25.43 71284 69 16765 50159 25.05 66924 70 16444 50545 24.55 66989 71 16723 48564 25.61 65287 72 16134 47699 25.28 63833 73 16302 49109 24.92 65411 74 15108 46455 24.54 61563 75 15004 45894 24.64 60898 76 15312 45659 25.11 60971 77 14880 45506 24.64 60386 78 15270 45224 25.24 60494 79 14150 45056 23.90 59206 80 14259 44110 24.43 58369 81 13984 43254 24.43 57238 82 14117 43382 24.55 57499 83 14034 41916 25.08 55950 84 15076 44151 25.45 59227 85 13755 42203 24.58 55958 86 13384 41555 24.36 54939 87 13200 39906 24.86 53106 88 13193 39975 24.81 53168 89 14082 40439 25.83 54521 90 13789 39804 25.73 53593 91 12998 38711 25.14 51709 92 12758 38177 25.05 50935 93 12784 38270 25.04 51054 94 12577 38217 24.76 50794 95 12798 37657 25.37 50455 96 12660 37658 25.16 50318 97 13233 38364 25.65 51597 98 11848 34394 25.62 46242 99 10632 0 100.00 10632 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 36429 195702 15.69 232131 2 38115 199415 16.05 237530 3 35503 201189 15.00 236692 4 38505 208367 15.60 246872 5 2633 380684 0.69 383317 6 2092 457655 0.46 459747 7 1319 248916 0.53 250235 8 1359 265369 0.51 266728 9 1085 227256 0.48 228341 10 1125 218436 0.51 219561 11 1532 272446 0.56 273978 12 1303 229624 0.56 230927 13 1199 227927 0.52 229126 14 1262 222847 0.56 224109 15 1182 209178 0.56 210360 16 1093 198923 0.55 200016 17 1290 210037 0.61 211327 18 1241 190972 0.65 192213 19 1234 186907 0.66 188141 20 1152 183573 0.62 184725 21 1234 179544 0.68 180778 22 1210 191010 0.63 192220 23 1091 189473 0.57 190564 24 1044 173839 0.60 174883 25 1036 177485 0.58 178521 26 1145 182330 0.62 183475 27 1075 172750 0.62 173825 28 1030 164550 0.62 165580 29 1105 172564 0.64 173669 30 1032 171441 0.60 172473 31 1013 163272 0.62 164285 32 975 165421 0.59 166396 33 1112 185045 0.60 186157 34 1040 162755 0.63 163795 35 1029 165843 0.62 166872 36 1056 165402 0.63 166458 37 953 154272 0.61 155225 38 965 157685 0.61 158650 39 975 151676 0.64 152651 40 955 149357 0.64 150312 41 935 146769 0.63 147704 42 991 139950 0.70 140941 43 871 141829 0.61 142700 44 875 144092 0.60 144967 45 858 136063 0.63 136921 46 830 136412 0.60 137242 47 886 140185 0.63 141071 48 884 134856 0.65 135740 49 789 136391 0.58 137180 50 860 133042 0.64 133902 51 803 126404 0.63 127207 52 826 125695 0.65 126521 53 940 139531 0.67 140471 54 802 128194 0.62 128996 55 797 124961 0.63 125758 56 820 127539 0.64 128359 57 780 120832 0.64 121612 58 755 117980 0.64 118735 59 790 122370 0.64 123160 60 787 117940 0.66 118727 61 755 118898 0.63 119653 62 770 118829 0.64 119599 63 812 117687 0.69 118499 64 739 112772 0.65 113511 65 738 113939 0.64 114677 66 702 108870 0.64 109572 67 719 113478 0.63 114197 68 654 111109 0.59 111763 69 649 111487 0.58 112136 70 692 109190 0.63 109882 71 640 109657 0.58 110297 72 683 104511 0.65 105194 73 658 102751 0.64 103409 74 634 106475 0.59 107109 75 647 102765 0.63 103412 76 586 98398 0.59 98984 77 624 102439 0.61 103063 78 589 97110 0.60 97699 79 609 97173 0.62 97782 80 596 94983 0.62 95579 81 522 91715 0.57 92237 82 538 90220 0.59 90758 83 580 91395 0.63 91975 84 562 88881 0.63 89443 85 589 94227 0.62 94816 86 516 87906 0.58 88422 87 526 87918 0.59 88444 88 506 84650 0.59 85156 89 511 87419 0.58 87930 90 585 85234 0.68 85819 91 524 87111 0.60 87635 92 509 84355 0.60 84864 93 507 81264 0.62 81771 94 505 80471 0.62 80976 95 537 82476 0.65 83013 96 496 78778 0.63 79274 97 529 77618 0.68 78147 98 396 74794 0.53 75190 99 278 0 100.00 278 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 49708 274761 15.32 324469 2 40339 227323 15.07 267662 3 41475 235913 14.95 277388 4 41034 228010 15.25 269044 5 4231 434233 0.96 438464 6 4135 604350 0.68 608485 7 4731 811738 0.58 816469 8 5088 804392 0.63 809480 9 5123 759355 0.67 764478 10 5033 777659 0.64 782692 11 5033 759694 0.66 764727 12 5027 710057 0.70 715084 13 5063 731620 0.69 736683 14 4916 733130 0.67 738046 15 4956 740027 0.67 744983 16 4859 708128 0.68 712987 17 4994 706370 0.70 711364 18 5070 703499 0.72 708569 19 4548 664454 0.68 669002 20 4736 690289 0.68 695025 21 4595 661388 0.69 665983 22 4532 644256 0.70 648788 23 4374 631690 0.69 636064 24 4284 610446 0.70 614730 25 4485 611506 0.73 615991 26 4374 607707 0.71 612081 27 4653 636992 0.73 641645 28 4402 613168 0.71 617570 29 4289 601188 0.71 605477 30 4320 589353 0.73 593673 31 4124 584669 0.70 588793 32 4032 571955 0.70 575987 33 4109 562048 0.73 566157 34 4141 555246 0.74 559387 35 4524 572063 0.78 576587 36 4192 561495 0.74 565687 37 4196 560799 0.74 564995 38 4152 579624 0.71 583776 39 3962 540368 0.73 544330 40 4068 557043 0.72 561111 41 3924 535810 0.73 539734 42 3972 540246 0.73 544218 43 3874 522163 0.74 526037 44 3831 518546 0.73 522377 45 3930 519063 0.75 522993 46 3758 525116 0.71 528874 47 3604 514904 0.70 518508 48 3684 505515 0.72 509199 49 3573 508899 0.70 512472 50 3526 502088 0.70 505614 51 3534 491611 0.71 495145 52 3454 472723 0.73 476177 53 3324 471250 0.70 474574 54 3321 461411 0.71 464732 55 3454 469460 0.73 472914 56 3255 458715 0.70 461970 57 3198 468044 0.68 471242 58 3131 454556 0.68 457687 59 3089 440755 0.70 443844 60 3238 452269 0.71 455507 61 3122 436789 0.71 439911 62 2954 434696 0.67 437650 63 2997 431671 0.69 434668 64 2937 419017 0.70 421954 65 2909 420507 0.69 423416 66 2948 409176 0.72 412124 67 2834 408584 0.69 411418 68 2954 417337 0.70 420291 69 2946 405802 0.72 408748 70 2720 395308 0.68 398028 71 2788 393267 0.70 396055 72 2644 388601 0.68 391245 73 2757 388039 0.71 390796 74 2593 388548 0.66 391141 75 2678 384611 0.69 387289 76 2599 372258 0.69 374857 77 2577 368468 0.69 371045 78 2607 368889 0.70 371496 79 2573 372194 0.69 374767 80 2514 359830 0.69 362344 81 2525 358437 0.70 360962 82 2568 354071 0.72 356639 83 2494 351033 0.71 353527 84 2516 347900 0.72 350416 85 2424 343320 0.70 345744 86 2315 343188 0.67 345503 87 2455 338617 0.72 341072 88 2348 329514 0.71 331862 89 2376 328651 0.72 331027 90 2294 326224 0.70 328518 91 2329 325028 0.71 327357 92 2249 321408 0.69 323657 93 2135 317511 0.67 319646 94 2169 311573 0.69 313742 95 2172 309488 0.70 311660 96 2083 301553 0.69 303636 97 2079 301689 0.68 303768 98 1717 284910 0.60 286627 99 1283 0 100.00 1283