/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R2_001_val_2.fq.gz
Data processed at 20:04 on 2019-08-12
Alignment Stats
Sequence pairs analysed in total
26302191
Paired-end alignments with a unique best hit
11581686
Pairs without alignments under any condition
12489960
Pairs that did not map uniquely
2230545
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
359357698
Methylated C's in CpG context
12471829
Methylated C's in CHG context
1771590
Methylated C's in CHH context
2827755
Methylated C's in Unknown context
53715
Unmethylated C's in CpG context
37593518
Unmethylated C's in CHG context
73195958
Unmethylated C's in CHH context
231497048
Unmethylated C's in Unknown context
768555
Percentage methylation (CpG context)
24.9%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5744513
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5837172
original bottom strand
Deduplication
Alignments analysed
11581685
Unique alignments
9854743
Duplicates removed
1726942
Duplicated alignments were found at 879906 different positions