EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 11613745 lines in total Total number of methylation call strings processed: 23227490 Final Cytosine Methylation Report ================================= Total number of C's analysed: 256681996 Total methylated C's in CpG context: 10137100 Total methylated C's in CHG context: 1260299 Total methylated C's in CHH context: 2323535 Total C to T conversions in CpG context: 24263858 Total C to T conversions in CHG context: 51430750 Total C to T conversions in CHH context: 167266454 C methylated in CpG context: 29.5% C methylated in CHG context: 2.4% C methylated in CHH context: 1.4%