CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 151458 264961 36.37 416419 2 139317 281786 33.08 421103 3 129644 245750 34.54 375394 4 129697 185260 41.18 314957 5 122886 160928 43.30 283814 6 121693 136560 47.12 258253 7 131726 131243 50.09 262969 8 62279 151786 29.09 214065 9 56448 138233 29.00 194681 10 56319 130646 30.12 186965 11 58202 133749 30.32 191951 12 55719 135786 29.10 191505 13 54562 138765 28.22 193327 14 51341 136775 27.29 188116 15 49599 138282 26.40 187881 16 46099 136304 25.27 182403 17 43875 131674 24.99 175549 18 44991 132918 25.29 177909 19 44540 135567 24.73 180107 20 45167 136692 24.84 181859 21 45908 139187 24.80 185095 22 44951 136545 24.77 181496 23 44275 135863 24.58 180138 24 43622 135789 24.31 179411 25 42688 134557 24.08 177245 26 42800 132873 24.36 175673 27 42916 136911 23.87 179827 28 44816 136319 24.74 181135 29 42955 138224 23.71 181179 30 42792 135750 23.97 178542 31 43281 132918 24.56 176199 32 42243 130730 24.42 172973 33 42822 131413 24.58 174235 34 44267 131092 25.24 175359 35 42282 130064 24.53 172346 36 41087 131160 23.85 172247 37 40773 128326 24.11 169099 38 40516 128792 23.93 169308 39 41899 130963 24.24 172862 40 41547 128549 24.43 170096 41 41328 130208 24.09 171536 42 42271 132302 24.21 174573 43 41875 131249 24.19 173124 44 41659 129183 24.38 170842 45 42112 128845 24.63 170957 46 43007 131106 24.70 174113 47 41826 127576 24.69 169402 48 41414 128564 24.36 169978 49 42701 129032 24.86 171733 50 41572 130979 24.09 172551 51 42105 129888 24.48 171993 52 41900 133447 23.90 175347 53 40363 127391 24.06 167754 54 40214 125492 24.27 165706 55 40162 122733 24.66 162895 56 39799 121766 24.63 161565 57 40317 123722 24.58 164039 58 40762 123608 24.80 164370 59 40737 122534 24.95 163271 60 39509 123309 24.27 162818 61 40246 121485 24.88 161731 62 39361 122883 24.26 162244 63 38649 121473 24.14 160122 64 38374 121211 24.05 159585 65 38886 120377 24.42 159263 66 39441 120804 24.61 160245 67 39154 119313 24.71 158467 68 37805 118449 24.19 156254 69 37782 117029 24.41 154811 70 37236 117183 24.11 154419 71 36994 115984 24.18 152978 72 36736 116173 24.02 152909 73 36583 114049 24.29 150632 74 36303 113429 24.25 149732 75 35058 112584 23.75 147642 76 35246 111774 23.97 147020 77 36009 110732 24.54 146741 78 35669 111559 24.23 147228 79 34927 110199 24.07 145126 80 34468 110045 23.85 144513 81 34291 109115 23.91 143406 82 33351 107790 23.63 141141 83 33958 109312 23.70 143270 84 33943 109052 23.74 142995 85 33900 107630 23.95 141530 86 32924 105236 23.83 138160 87 32181 104754 23.50 136935 88 32883 105222 23.81 138105 89 31955 104590 23.40 136545 90 31406 103614 23.26 135020 91 31491 101851 23.62 133342 92 31123 101516 23.46 132639 93 31239 102031 23.44 133270 94 31077 100209 23.67 131286 95 30189 99747 23.23 129936 96 30670 101335 23.23 132005 97 29909 97074 23.55 126983 98 27660 91424 23.23 119084 99 21785 72426 23.12 94211 100 28236 91343 23.61 119579 101 25522 90338 22.03 115860 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 219117 263359 45.42 482476 2 128995 230776 35.85 359771 3 48807 226066 17.76 274873 4 21496 238985 8.25 260481 5 12504 222891 5.31 235395 6 10396 212177 4.67 222573 7 7920 273800 2.81 281720 8 3413 297700 1.13 301113 9 2913 276762 1.04 279675 10 2792 261138 1.06 263930 11 2879 263038 1.08 265917 12 2875 262056 1.09 264931 13 2396 251328 0.94 253724 14 2248 251221 0.89 253469 15 2109 256923 0.81 259032 16 1925 256558 0.74 258483 17 1886 254124 0.74 256010 18 1851 251170 0.73 253021 19 1820 252231 0.72 254051 20 1842 264693 0.69 266535 21 1788 268513 0.66 270301 22 1947 265494 0.73 267441 23 1981 269244 0.73 271225 24 1813 269925 0.67 271738 25 1837 261648 0.70 263485 26 1949 263859 0.73 265808 27 1872 266569 0.70 268441 28 1821 265282 0.68 267103 29 1893 267900 0.70 269793 30 1812 272055 0.66 273867 31 1855 265639 0.69 267494 32 1881 267209 0.70 269090 33 1864 267484 0.69 269348 34 1879 264510 0.71 266389 35 1979 264671 0.74 266650 36 1939 264791 0.73 266730 37 1835 259973 0.70 261808 38 1949 263095 0.74 265044 39 1880 261499 0.71 263379 40 1915 259227 0.73 261142 41 1864 260306 0.71 262170 42 1888 260499 0.72 262387 43 1896 258618 0.73 260514 44 1957 261773 0.74 263730 45 1955 262017 0.74 263972 46 2001 258145 0.77 260146 47 2006 258645 0.77 260651 48 1985 263348 0.75 265333 49 1964 257704 0.76 259668 50 2081 259107 0.80 261188 51 2124 261278 0.81 263402 52 2111 258350 0.81 260461 53 2133 257339 0.82 259472 54 2061 260028 0.79 262089 55 2107 256062 0.82 258169 56 2048 257880 0.79 259928 57 2206 256492 0.85 258698 58 2405 254045 0.94 256450 59 2212 256415 0.86 258627 60 2188 257497 0.84 259685 61 2176 254394 0.85 256570 62 2340 255968 0.91 258308 63 2221 252631 0.87 254852 64 2192 253246 0.86 255438 65 2347 252244 0.92 254591 66 2354 248556 0.94 250910 67 2180 242989 0.89 245169 68 2331 245150 0.94 247481 69 2318 245211 0.94 247529 70 2275 242604 0.93 244879 71 2212 241130 0.91 243342 72 2331 240807 0.96 243138 73 2164 237012 0.90 239176 74 2199 235954 0.92 238153 75 2244 236878 0.94 239122 76 2163 230422 0.93 232585 77 2208 233082 0.94 235290 78 2209 229082 0.96 231291 79 2203 226129 0.96 228332 80 2249 225094 0.99 227343 81 2141 223734 0.95 225875 82 2218 220751 0.99 222969 83 2236 223787 0.99 226023 84 2214 224117 0.98 226331 85 2288 220276 1.03 222564 86 2270 222672 1.01 224942 87 2197 221887 0.98 224084 88 2250 217769 1.02 220019 89 2262 216227 1.04 218489 90 2244 216538 1.03 218782 91 2238 213914 1.04 216152 92 2399 214874 1.10 217273 93 2432 211819 1.14 214251 94 2374 208472 1.13 210846 95 2456 207538 1.17 209994 96 2391 205769 1.15 208160 97 2247 188551 1.18 190798 98 2096 173144 1.20 175240 99 1414 112594 1.24 114008 100 1493 114127 1.29 115620 101 3163 186537 1.67 189700 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 189508 278323 40.51 467831 2 85497 293465 22.56 378962 3 37897 387076 8.92 424973 4 30081 427826 6.57 457907 5 26093 519078 4.79 545171 6 20321 576050 3.41 596371 7 18621 747754 2.43 766375 8 10389 809975 1.27 820364 9 8143 738386 1.09 746529 10 7909 720190 1.09 728099 11 8557 722449 1.17 731006 12 7708 734633 1.04 742341 13 8287 752258 1.09 760545 14 8331 771536 1.07 779867 15 7785 789581 0.98 797366 16 7653 805252 0.94 812905 17 8439 810064 1.03 818503 18 7586 838884 0.90 846470 19 7402 857561 0.86 864963 20 8241 883677 0.92 891918 21 7633 884106 0.86 891739 22 7986 884103 0.90 892089 23 8486 886378 0.95 894864 24 7694 890080 0.86 897774 25 7972 895916 0.88 903888 26 8542 900156 0.94 908698 27 7853 905187 0.86 913040 28 7646 905196 0.84 912842 29 8396 900342 0.92 908738 30 7700 890766 0.86 898466 31 7656 878680 0.86 886336 32 8505 885242 0.95 893747 33 7629 879921 0.86 887550 34 8314 887336 0.93 895650 35 8412 878230 0.95 886642 36 7834 887582 0.87 895416 37 7780 882258 0.87 890038 38 8238 884359 0.92 892597 39 7457 877768 0.84 885225 40 7823 877546 0.88 885369 41 8373 882377 0.94 890750 42 7856 890910 0.87 898766 43 8037 877514 0.91 885551 44 8269 884723 0.93 892992 45 7779 875192 0.88 882971 46 8054 880320 0.91 888374 47 8398 875431 0.95 883829 48 7698 873032 0.87 880730 49 7817 863260 0.90 871077 50 8360 860971 0.96 869331 51 7664 852407 0.89 860071 52 7764 848758 0.91 856522 53 8349 843981 0.98 852330 54 7654 845332 0.90 852986 55 7939 845845 0.93 853784 56 8343 842262 0.98 850605 57 7555 856854 0.87 864409 58 8832 847170 1.03 856002 59 8489 855995 0.98 864484 60 7501 843939 0.88 851440 61 7860 840400 0.93 848260 62 8113 834296 0.96 842409 63 7770 828752 0.93 836522 64 7926 826689 0.95 834615 65 8256 825480 0.99 833736 66 7542 819307 0.91 826849 67 7808 818244 0.95 826052 68 8211 814436 1.00 822647 69 7432 810748 0.91 818180 70 7620 807335 0.94 814955 71 8245 803370 1.02 811615 72 7449 801227 0.92 808676 73 7897 792436 0.99 800333 74 7967 791280 1.00 799247 75 7396 789316 0.93 796712 76 7522 785473 0.95 792995 77 7886 780087 1.00 787973 78 7199 773843 0.92 781042 79 7301 770821 0.94 778122 80 7716 767946 0.99 775662 81 7285 757191 0.95 764476 82 7386 750536 0.97 757922 83 7789 754565 1.02 762354 84 7158 744823 0.95 751981 85 6960 737462 0.93 744422 86 7452 732488 1.01 739940 87 7067 728774 0.96 735841 88 6937 727145 0.94 734082 89 7351 720751 1.01 728102 90 6891 716678 0.95 723569 91 6812 710901 0.95 717713 92 7072 706721 0.99 713793 93 6720 701267 0.95 707987 94 6906 693375 0.99 700281 95 7316 686477 1.05 693793 96 6579 673277 0.97 679856 97 6537 655203 0.99 661740 98 6654 609637 1.08 616291 99 4338 421876 1.02 426214 100 4534 377112 1.19 381646 101 6755 617287 1.08 624042 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 91117 125482 42.07 216599 2 80600 112342 41.77 192942 3 89763 127058 41.40 216821 4 86144 142952 37.60 229096 5 36905 179452 17.06 216357 6 21415 95591 18.30 117006 7 19462 102200 16.00 121662 8 20157 96312 17.31 116469 9 18618 86026 17.79 104644 10 21005 93938 18.27 114943 11 21898 91132 19.37 113030 12 21792 87901 19.87 109693 13 21932 86605 20.21 108537 14 23567 87801 21.16 111368 15 22551 81283 21.72 103834 16 21959 78678 21.82 100637 17 25733 85653 23.10 111386 18 25117 82867 23.26 107984 19 24310 79612 23.39 103922 20 22851 77551 22.76 100402 21 23911 76867 23.73 100778 22 23441 77372 23.25 100813 23 22463 75050 23.04 97513 24 21547 71514 23.15 93061 25 23047 75304 23.43 98351 26 21362 72421 22.78 93783 27 22952 72643 24.01 95595 28 21507 70427 23.39 91934 29 21842 72189 23.23 94031 30 21581 67939 24.11 89520 31 20654 68499 23.17 89153 32 19878 64301 23.61 84179 33 21766 65552 24.93 87318 34 21130 67838 23.75 88968 35 24281 72189 25.17 96470 36 21437 65295 24.72 86732 37 21436 66440 24.39 87876 38 19889 64055 23.69 83944 39 20447 63114 24.47 83561 40 21456 63845 25.15 85301 41 19719 62101 24.10 81820 42 19708 62939 23.85 82647 43 19879 61694 24.37 81573 44 18890 60181 23.89 79071 45 21611 64564 25.08 86175 46 18341 56845 24.39 75186 47 18894 57604 24.70 76498 48 18409 57297 24.32 75706 49 17762 56707 23.85 74469 50 17106 54421 23.92 71527 51 17381 53407 24.55 70788 52 17277 54765 23.98 72042 53 17426 52501 24.92 69927 54 17109 53069 24.38 70178 55 17136 53408 24.29 70544 56 16013 51709 23.65 67722 57 16719 50945 24.71 67664 58 16325 50859 24.30 67184 59 15950 48496 24.75 64446 60 16310 49303 24.86 65613 61 14487 47666 23.31 62153 62 14738 47491 23.68 62229 63 15467 46952 24.78 62419 64 15007 46161 24.53 61168 65 14359 43899 24.65 58258 66 15134 45704 24.88 60838 67 13962 45748 23.38 59710 68 14778 46217 24.23 60995 69 13486 42742 23.98 56228 70 13554 42444 24.20 55998 71 13749 41675 24.81 55424 72 13118 41348 24.08 54466 73 13041 41551 23.89 54592 74 12283 39855 23.56 52138 75 12460 39354 24.05 51814 76 12345 38627 24.22 50972 77 12105 38788 23.79 50893 78 12323 39175 23.93 51498 79 11550 37825 23.39 49375 80 11535 37629 23.46 49164 81 11399 36751 23.67 48150 82 11488 36947 23.72 48435 83 11398 35636 24.23 47034 84 12111 37512 24.41 49623 85 11235 35578 24.00 46813 86 10879 35230 23.59 46109 87 10884 33733 24.39 44617 88 10986 33938 24.45 44924 89 11212 34249 24.66 45461 90 11038 33607 24.72 44645 91 10687 33153 24.38 43840 92 10180 32423 23.90 42603 93 10489 32236 24.55 42725 94 10562 32259 24.67 42821 95 10346 31703 24.60 42049 96 10020 31461 24.16 41481 97 10508 31836 24.82 42344 98 9526 29094 24.67 38620 99 8429 0 100.00 8429 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 31522 167765 15.82 199287 2 33189 170328 16.31 203517 3 30954 172575 15.21 203529 4 34113 179013 16.01 213126 5 2370 329403 0.71 331773 6 1740 393986 0.44 395726 7 1060 213005 0.50 214065 8 1185 226096 0.52 227281 9 1025 196060 0.52 197085 10 1049 185795 0.56 186844 11 1314 232255 0.56 233569 12 1130 195335 0.58 196465 13 1090 194317 0.56 195407 14 1113 190001 0.58 191114 15 1087 179624 0.60 180711 16 985 170369 0.57 171354 17 1164 179784 0.64 180948 18 1092 162713 0.67 163805 19 1070 159643 0.67 160713 20 931 159169 0.58 160100 21 1046 153814 0.68 154860 22 970 163016 0.59 163986 23 1025 160980 0.63 162005 24 911 149445 0.61 150356 25 894 150986 0.59 151880 26 990 155557 0.63 156547 27 926 146961 0.63 147887 28 865 139985 0.61 140850 29 928 147925 0.62 148853 30 951 145995 0.65 146946 31 885 139099 0.63 139984 32 916 141326 0.64 142242 33 858 158256 0.54 159114 34 786 138559 0.56 139345 35 902 141316 0.63 142218 36 870 140790 0.61 141660 37 753 130604 0.57 131357 38 820 134737 0.60 135557 39 786 128442 0.61 129228 40 816 127024 0.64 127840 41 773 124398 0.62 125171 42 795 118402 0.67 119197 43 700 120871 0.58 121571 44 743 122824 0.60 123567 45 769 115404 0.66 116173 46 728 115071 0.63 115799 47 807 118221 0.68 119028 48 701 113941 0.61 114642 49 723 115505 0.62 116228 50 693 112930 0.61 113623 51 676 106932 0.63 107608 52 701 106131 0.66 106832 53 705 116856 0.60 117561 54 735 107983 0.68 108718 55 716 105425 0.67 106141 56 688 107025 0.64 107713 57 682 101231 0.67 101913 58 674 99653 0.67 100327 59 657 102781 0.64 103438 60 665 99350 0.66 100015 61 672 99517 0.67 100189 62 704 100291 0.70 100995 63 678 99051 0.68 99729 64 536 94528 0.56 95064 65 659 95716 0.68 96375 66 587 90979 0.64 91566 67 602 95298 0.63 95900 68 606 91998 0.65 92604 69 582 93201 0.62 93783 70 567 91817 0.61 92384 71 610 91853 0.66 92463 72 519 87859 0.59 88378 73 522 86101 0.60 86623 74 524 88894 0.59 89418 75 515 85387 0.60 85902 76 519 81144 0.64 81663 77 510 85560 0.59 86070 78 512 80886 0.63 81398 79 512 80571 0.63 81083 80 537 79121 0.67 79658 81 461 76117 0.60 76578 82 474 75458 0.62 75932 83 488 76353 0.64 76841 84 495 73926 0.67 74421 85 470 78411 0.60 78881 86 470 73366 0.64 73836 87 472 72748 0.64 73220 88 424 70214 0.60 70638 89 487 72530 0.67 73017 90 487 71449 0.68 71936 91 435 72628 0.60 73063 92 372 70120 0.53 70492 93 468 67852 0.69 68320 94 448 66494 0.67 66942 95 431 68232 0.63 68663 96 435 65046 0.66 65481 97 431 63714 0.67 64145 98 353 61981 0.57 62334 99 239 0 100.00 239 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43839 234486 15.75 278325 2 35540 197351 15.26 232891 3 36920 202174 15.44 239094 4 36441 196046 15.67 232487 5 3730 374482 0.99 378212 6 3706 514864 0.71 518570 7 4288 691580 0.62 695868 8 4465 685368 0.65 689833 9 4617 646021 0.71 650638 10 4507 661390 0.68 665897 11 4451 645480 0.68 649931 12 4549 603247 0.75 607796 13 4466 620619 0.71 625085 14 4339 622698 0.69 627037 15 4451 626407 0.71 630858 16 4215 600047 0.70 604262 17 4374 599864 0.72 604238 18 4362 597480 0.72 601842 19 4106 563037 0.72 567143 20 4148 582030 0.71 586178 21 4124 559622 0.73 563746 22 4043 543002 0.74 547045 23 3727 531813 0.70 535540 24 3938 514511 0.76 518449 25 3941 513356 0.76 517297 26 3783 511664 0.73 515447 27 4129 538760 0.76 542889 28 3756 516302 0.72 520058 29 3711 507781 0.73 511492 30 3707 497568 0.74 501275 31 3655 492077 0.74 495732 32 3451 480403 0.71 483854 33 3519 472314 0.74 475833 34 3589 467374 0.76 470963 35 4038 481177 0.83 485215 36 3588 473038 0.75 476626 37 3694 470533 0.78 474227 38 3661 485232 0.75 488893 39 3504 452839 0.77 456343 40 3560 467815 0.76 471375 41 3319 449026 0.73 452345 42 3461 453362 0.76 456823 43 3339 434287 0.76 437626 44 3149 433092 0.72 436241 45 3355 432886 0.77 436241 46 3233 436749 0.73 439982 47 3230 428312 0.75 431542 48 3280 419508 0.78 422788 49 3183 423201 0.75 426384 50 3070 417666 0.73 420736 51 3075 409269 0.75 412344 52 2921 393455 0.74 396376 53 2791 390177 0.71 392968 54 2828 382251 0.73 385079 55 2873 389989 0.73 392862 56 2818 381487 0.73 384305 57 2813 387694 0.72 390507 58 2722 377851 0.72 380573 59 2775 364952 0.75 367727 60 2837 373123 0.75 375960 61 2595 359510 0.72 362105 62 2600 357462 0.72 360062 63 2700 355279 0.75 357979 64 2447 345745 0.70 348192 65 2519 347149 0.72 349668 66 2620 336832 0.77 339452 67 2446 335666 0.72 338112 68 2536 344292 0.73 346828 69 2458 333901 0.73 336359 70 2430 324176 0.74 326606 71 2419 323298 0.74 325717 72 2361 318659 0.74 321020 73 2345 316727 0.73 319072 74 2244 317449 0.70 319693 75 2308 314011 0.73 316319 76 2199 304075 0.72 306274 77 2275 300902 0.75 303177 78 2192 301501 0.72 303693 79 2187 304017 0.71 306204 80 2162 295745 0.73 297907 81 2208 292298 0.75 294506 82 2043 289216 0.70 291259 83 2132 286809 0.74 288941 84 2166 283930 0.76 286096 85 2043 280535 0.72 282578 86 2057 279009 0.73 281066 87 2104 275249 0.76 277353 88 1940 268574 0.72 270514 89 2014 268385 0.74 270399 90 2056 264579 0.77 266635 91 2003 262724 0.76 264727 92 1880 261028 0.72 262908 93 1907 256122 0.74 258029 94 1858 252792 0.73 254650 95 1822 249899 0.72 251721 96 1832 244968 0.74 246800 97 1637 243280 0.67 244917 98 1443 230890 0.62 232333 99 1108 0 100.00 1108