File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.bam 24505793 9915441 12555282 2035069 1 2705164 7210277 154371720 6619617 14863708 739999 32156644 1943298 98048454 EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.bam 29855018 11727816 15750735 2376467 0 3318046 8409770 181742375 7874020 16740253 929405 36920601 2251146 117026950 EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.bam 26009397 10439071 13324084 2246240 2 3739516 6699555 136016129 5750945 13021245 699624 28351144 1733351 86459820 EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.bam 25226760 9405544 13904236 1916980 0 2636021 6769523 142831749 5958725 13541358 672814 29209282 1876297 91573273 EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.bam 15453987 6380873 7739907 1333207 0 1736608 4644265 99137282 4217985 9196803 535634 20037165 1932988 63216707 EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.bam 31922572 12255648 16675995 2990928 1 3263582 8992066 176538868 7344361 16933790 912079 36262599 2297548 112788491 EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.bam 24510805 8593705 13929047 1988051 2 2262879 6330826 124508835 4903316 12097133 619102 25334277 1795108 79759899 EPI-162_S9_L002_R1_001_val_1_bismark_bt2_pe.bam 22769546 8267039 12467371 2035136 0 1883875 6383164 122908719 4824979 12090566 612515 25238601 1827593 78314465 EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.bam 24481250 10438000 12046563 1996687 0 2802912 7635088 169475057 6721143 15986854 1081552 34252524 3482873 107950111 EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.bam 22688467 8967128 11891374 1829965 0 2474742 6492386 139836026 5749134 13380784 652679 28960958 1958750 89133721 EPI-169_S12_L002_R1_001_val_1_bismark_bt2_pe.bam 21392200 8408055 10932504 2051637 4 1984624 6423431 127237948 5351229 12254820 663359 26439097 2095978 80433465 EPI-170_S13_L002_R1_001_val_1_bismark_bt2_pe.bam 27996279 10233760 15243065 2519447 7 2436682 7797078 151781122 5915753 15089108 746213 31172597 1797219 97060232