/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R2_001_val_2.fq.gz
Data processed at 11:37 on 2019-08-07
Alignment Stats
Sequence pairs analysed in total
27996279
Paired-end alignments with a unique best hit
10233767
Pairs without alignments under any condition
15243065
Pairs that did not map uniquely
2519447
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
295230497
Methylated C's in CpG context
10743620
Methylated C's in CHG context
1476561
Methylated C's in CHH context
3272606
Methylated C's in Unknown context
54419
Unmethylated C's in CpG context
31907626
Unmethylated C's in CHG context
62815831
Unmethylated C's in CHH context
185014253
Unmethylated C's in Unknown context
638215
Percentage methylation (CpG context)
25.2%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5017772
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5215988
original bottom strand
Deduplication
Alignments analysed
10233760
Unique alignments
7797078
Duplicates removed
2436682
Duplicated alignments were found at 1417870 different positions
