CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 104015 143423 42.04 247438 2 98539 156102 38.70 254641 3 98094 143845 40.54 241939 4 104353 126758 45.15 231111 5 101106 111675 47.52 212781 6 99430 92965 51.68 192395 7 109654 91613 54.48 201267 8 54760 104367 34.41 159127 9 48885 98916 33.07 147801 10 48927 96318 33.69 145245 11 50946 99117 33.95 150063 12 49290 99869 33.05 149159 13 48748 100441 32.68 149189 14 46808 101148 31.64 147956 15 45415 102361 30.73 147776 16 42899 102198 29.57 145097 17 41287 99050 29.42 140337 18 42295 101332 29.45 143627 19 41089 101654 28.79 142743 20 42101 102935 29.03 145036 21 42164 103404 28.97 145568 22 41390 102149 28.84 143539 23 41120 101599 28.81 142719 24 40446 101818 28.43 142264 25 40430 101298 28.53 141728 26 40108 99839 28.66 139947 27 39724 102288 27.97 142012 28 41165 102442 28.67 143607 29 40152 101609 28.32 141761 30 39672 101782 28.05 141454 31 40140 100803 28.48 140943 32 39219 98443 28.49 137662 33 39995 99592 28.65 139587 34 40658 99387 29.03 140045 35 39442 98588 28.57 138030 36 39229 99518 28.27 138747 37 38006 97529 28.04 135535 38 37822 96944 28.06 134766 39 39122 98373 28.45 137495 40 38378 97025 28.34 135403 41 38547 96363 28.57 134910 42 39105 98045 28.51 137150 43 38399 96383 28.49 134782 44 37911 95637 28.39 133548 45 38741 95757 28.80 134498 46 38611 96016 28.68 134627 47 37782 94006 28.67 131788 48 36959 93797 28.27 130756 49 38585 93286 29.26 131871 50 37061 94324 28.21 131385 51 37277 93578 28.49 130855 52 37989 95221 28.52 133210 53 36400 91356 28.49 127756 54 36246 90711 28.55 126957 55 35547 88035 28.76 123582 56 35289 87782 28.67 123071 57 35392 88473 28.57 123865 58 35332 88556 28.52 123888 59 35308 87074 28.85 122382 60 34745 87108 28.51 121853 61 34555 85187 28.86 119742 62 33811 85858 28.25 119669 63 33781 85129 28.41 118910 64 32752 83630 28.14 116382 65 32623 82926 28.23 115549 66 33733 83511 28.77 117244 67 33033 81353 28.88 114386 68 32048 80696 28.43 112744 69 31832 79806 28.51 111638 70 31053 79036 28.21 110089 71 30759 77451 28.43 108210 72 30607 77016 28.44 107623 73 29902 76042 28.22 105944 74 29956 75911 28.30 105867 75 28964 75380 27.76 104344 76 29104 74047 28.21 103151 77 29059 72764 28.54 101823 78 29144 73562 28.38 102706 79 28198 72139 28.10 100337 80 28058 71826 28.09 99884 81 27598 71115 27.96 98713 82 27066 69399 28.06 96465 83 27380 69608 28.23 96988 84 26798 69379 27.86 96177 85 26534 68484 27.93 95018 86 25706 67253 27.65 92959 87 24990 66732 27.25 91722 88 25319 65792 27.79 91111 89 24647 65134 27.45 89781 90 24483 65299 27.27 89782 91 24221 63521 27.60 87742 92 23853 63125 27.42 86978 93 23696 63014 27.33 86710 94 23555 62151 27.48 85706 95 23295 61586 27.44 84881 96 23230 61648 27.37 84878 97 22390 59600 27.31 81990 98 20983 55426 27.46 76409 99 16515 43891 27.34 60406 100 21487 55004 28.09 76491 101 19765 54962 26.45 74727 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 120613 214800 35.96 335413 2 70002 201031 25.83 271033 3 33509 200983 14.29 234492 4 19807 203747 8.86 223554 5 12502 183921 6.36 196423 6 10790 173199 5.86 183989 7 7613 213413 3.44 221026 8 3680 231358 1.57 235038 9 3176 221580 1.41 224756 10 3127 214739 1.44 217866 11 3176 216776 1.44 219952 12 3054 214579 1.40 217633 13 2733 209307 1.29 212040 14 2653 211334 1.24 213987 15 2646 214989 1.22 217635 16 2345 215900 1.07 218245 17 2350 213163 1.09 215513 18 2219 211905 1.04 214124 19 2229 210121 1.05 212350 20 2434 221025 1.09 223459 21 2399 222773 1.07 225172 22 2472 220134 1.11 222606 23 2370 224486 1.04 226856 24 2409 224970 1.06 227379 25 2389 219193 1.08 221582 26 2819 219109 1.27 221928 27 2431 224112 1.07 226543 28 2407 222617 1.07 225024 29 2641 224508 1.16 227149 30 2377 225552 1.04 227929 31 2459 219132 1.11 221591 32 2495 223554 1.10 226049 33 2443 222872 1.08 225315 34 2536 219739 1.14 222275 35 2797 218957 1.26 221754 36 2522 220447 1.13 222969 37 2618 213899 1.21 216517 38 2828 217661 1.28 220489 39 2580 217205 1.17 219785 40 2574 215282 1.18 217856 41 2532 214249 1.17 216781 42 2432 215044 1.12 217476 43 2511 211253 1.17 213764 44 2546 213447 1.18 215993 45 2657 212323 1.24 214980 46 2659 210097 1.25 212756 47 2812 209292 1.33 212104 48 2669 213832 1.23 216501 49 2657 207144 1.27 209801 50 2892 205801 1.39 208693 51 2670 207023 1.27 209693 52 2785 206959 1.33 209744 53 2673 203319 1.30 205992 54 2915 203576 1.41 206491 55 2768 200294 1.36 203062 56 2711 200946 1.33 203657 57 2788 199934 1.38 202722 58 2737 197962 1.36 200699 59 2795 196962 1.40 199757 60 2808 196055 1.41 198863 61 2752 193012 1.41 195764 62 2886 192622 1.48 195508 63 2665 190709 1.38 193374 64 2805 188465 1.47 191270 65 3159 188214 1.65 191373 66 2770 184592 1.48 187362 67 2760 180065 1.51 182825 68 2943 180991 1.60 183934 69 2700 179042 1.49 181742 70 2667 175177 1.50 177844 71 2581 174582 1.46 177163 72 2594 173639 1.47 176233 73 2502 171551 1.44 174053 74 2685 169747 1.56 172432 75 2535 169535 1.47 172070 76 2421 163523 1.46 165944 77 2672 163951 1.60 166623 78 2472 162691 1.50 165163 79 2427 158639 1.51 161066 80 2405 158058 1.50 160463 81 2395 155179 1.52 157574 82 2371 152571 1.53 154942 83 2469 155129 1.57 157598 84 2473 154254 1.58 156727 85 2453 151292 1.60 153745 86 2367 151228 1.54 153595 87 2279 150851 1.49 153130 88 2456 147445 1.64 149901 89 2435 145773 1.64 148208 90 2288 144968 1.55 147256 91 2274 143164 1.56 145438 92 2375 142913 1.63 145288 93 2393 140811 1.67 143204 94 2349 137985 1.67 140334 95 2251 136749 1.62 139000 96 2203 135595 1.60 137798 97 2187 123519 1.74 125706 98 1982 113362 1.72 115344 99 1240 73578 1.66 74818 100 1428 74527 1.88 75955 101 3014 122931 2.39 125945 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 161818 305924 34.60 467742 2 86634 327616 20.91 414250 3 48118 367224 11.59 415342 4 40794 390568 9.46 431362 5 38758 447591 7.97 486349 6 31044 483100 6.04 514144 7 24801 601372 3.96 626173 8 17767 644439 2.68 662206 9 13087 599893 2.13 612980 10 13021 586824 2.17 599845 11 15964 588895 2.64 604859 12 13047 597071 2.14 610118 13 14607 606020 2.35 620627 14 16579 621862 2.60 638441 15 13718 635637 2.11 649355 16 13402 641145 2.05 654547 17 16077 646546 2.43 662623 18 13406 667686 1.97 681092 19 13357 678577 1.93 691934 20 15952 699685 2.23 715637 21 13319 700199 1.87 713518 22 14531 699943 2.03 714474 23 16478 701287 2.30 717765 24 13882 701335 1.94 715217 25 14810 704234 2.06 719044 26 16945 708715 2.34 725660 27 14097 711540 1.94 725637 28 13510 713943 1.86 727453 29 16333 711710 2.24 728043 30 13959 704943 1.94 718902 31 14094 696260 1.98 710354 32 15982 694502 2.25 710484 33 13526 693901 1.91 707427 34 15227 696095 2.14 711322 35 16136 688472 2.29 704608 36 13713 694402 1.94 708115 37 13647 685878 1.95 699525 38 15745 688427 2.24 704172 39 12988 680655 1.87 693643 40 13297 676316 1.93 689613 41 15554 679037 2.24 694591 42 13678 679523 1.97 693201 43 14476 672061 2.11 686537 44 15394 674898 2.23 690292 45 13562 666067 2.00 679629 46 13378 665296 1.97 678674 47 14906 660056 2.21 674962 48 12937 656751 1.93 669688 49 13148 649392 1.98 662540 50 14690 644626 2.23 659316 51 12315 637653 1.89 649968 52 13559 631962 2.10 645521 53 14998 625523 2.34 640521 54 12900 621899 2.03 634799 55 13044 617148 2.07 630192 56 14747 614800 2.34 629547 57 12177 616901 1.94 629078 58 12849 610936 2.06 623785 59 14667 611074 2.34 625741 60 11803 603538 1.92 615341 61 12828 597360 2.10 610188 62 13764 588091 2.29 601855 63 11909 583389 2.00 595298 64 12832 578980 2.17 591812 65 13691 572870 2.33 586561 66 11467 567577 1.98 579044 67 11766 562592 2.05 574358 68 13568 559254 2.37 572822 69 10989 554033 1.94 565022 70 11474 548751 2.05 560225 71 12934 547205 2.31 560139 72 11067 541659 2.00 552726 73 12123 531248 2.23 543371 74 12439 530681 2.29 543120 75 10803 525213 2.02 536016 76 10811 521916 2.03 532727 77 12731 517235 2.40 529966 78 10042 510772 1.93 520814 79 10651 506785 2.06 517436 80 11982 501319 2.33 513301 81 10499 493158 2.08 503657 82 10931 488009 2.19 498940 83 12106 488279 2.42 500385 84 10286 481093 2.09 491379 85 10533 472046 2.18 482579 86 11396 467445 2.38 478841 87 9978 462990 2.11 472968 88 9988 457997 2.13 467985 89 11202 453546 2.41 464748 90 9418 450903 2.05 460321 91 9701 444314 2.14 454015 92 10427 440648 2.31 451075 93 9043 435857 2.03 444900 94 9173 429345 2.09 438518 95 10430 423303 2.40 433733 96 8793 413814 2.08 422607 97 8529 401410 2.08 409939 98 9163 374291 2.39 383454 99 5497 259063 2.08 264560 100 6141 230715 2.59 236856 101 9276 375504 2.41 384780 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74257 78877 48.49 153134 2 63247 66047 48.92 129294 3 68687 74243 48.06 142930 4 62391 83473 42.77 145864 5 28302 108433 20.70 136735 6 17093 59011 22.46 76104 7 14687 61571 19.26 76258 8 15293 56361 21.34 71654 9 13481 49254 21.49 62735 10 15064 54437 21.67 69501 11 15966 52793 23.22 68759 12 15452 50036 23.60 65488 13 15543 49444 23.92 64987 14 16597 50602 24.70 67199 15 16161 46154 25.93 62315 16 15059 44061 25.47 59120 17 18141 48157 27.36 66298 18 17402 46838 27.09 64240 19 16739 45185 27.03 61924 20 15323 43670 25.97 58993 21 16045 42287 27.51 58332 22 16320 43562 27.25 59882 23 15101 41851 26.52 56952 24 14096 39437 26.33 53533 25 15879 41879 27.49 57758 26 14359 39848 26.49 54207 27 15314 40218 27.58 55532 28 14285 38167 27.23 52452 29 14588 39604 26.92 54192 30 14155 36872 27.74 51027 31 13482 37394 26.50 50876 32 13343 35358 27.40 48701 33 15147 36323 29.43 51470 34 14326 37523 27.63 51849 35 16768 40589 29.23 57357 36 14463 35571 28.91 50034 37 14664 36994 28.39 51658 38 13057 35208 27.05 48265 39 13539 34689 28.07 48228 40 14661 34851 29.61 49512 41 12945 34131 27.50 47076 42 13022 35305 26.95 48327 43 12911 34027 27.51 46938 44 12026 33221 26.58 45247 45 14969 36089 29.32 51058 46 11472 30764 27.16 42236 47 12026 31171 27.84 43197 48 12148 31570 27.79 43718 49 11710 31426 27.15 43136 50 11246 29680 27.48 40926 51 11120 28798 27.86 39918 52 10861 29264 27.07 40125 53 11297 28468 28.41 39765 54 11119 29111 27.64 40230 55 11311 28941 28.10 40252 56 10433 28201 27.00 38634 57 10625 28764 26.97 39389 58 10554 27637 27.63 38191 59 10141 26303 27.83 36444 60 10466 26974 27.95 37440 61 9454 25623 26.95 35077 62 9538 25311 27.37 34849 63 10192 25032 28.93 35224 64 9672 24644 28.19 34316 65 9329 23806 28.15 33135 66 9977 24521 28.92 34498 67 9137 24786 26.93 33923 68 10177 25485 28.54 35662 69 9032 22969 28.22 32001 70 8642 22708 27.57 31350 71 8884 22101 28.67 30985 72 8267 21438 27.83 29705 73 8552 22258 27.76 30810 74 7806 21145 26.96 28951 75 7868 20994 27.26 28862 76 8062 20263 28.46 28325 77 7769 20666 27.32 28435 78 7800 20461 27.60 28261 79 7334 19713 27.12 27047 80 7362 19948 26.96 27310 81 7331 19675 27.15 27006 82 7378 19764 27.18 27142 83 7500 19056 28.24 26556 84 8004 20738 27.85 28742 85 7044 18945 27.10 25989 86 7002 18825 27.11 25827 87 6929 18109 27.67 25038 88 7031 17884 28.22 24915 89 7351 18746 28.17 26097 90 7136 18439 27.90 25575 91 6643 17519 27.49 24162 92 6476 17147 27.41 23623 93 6780 17032 28.47 23812 94 6729 17376 27.92 24105 95 6477 17033 27.55 23510 96 6301 16896 27.16 23197 97 7027 18096 27.97 25123 98 6189 15533 28.49 21722 99 5436 0 100.00 5436 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20912 100655 17.20 121567 2 21375 103367 17.14 124742 3 19227 103132 15.71 122359 4 20965 109562 16.06 130527 5 2221 201430 1.09 203651 6 1640 248350 0.66 249990 7 1077 137267 0.78 138344 8 1105 145446 0.75 146551 9 943 119796 0.78 120739 10 954 114479 0.83 115433 11 1403 154076 0.90 155479 12 1068 122853 0.86 123921 13 1068 120649 0.88 121717 14 981 115476 0.84 116457 15 1003 111460 0.89 112463 16 914 104066 0.87 104980 17 1024 110416 0.92 111440 18 1124 98654 1.13 99778 19 911 96146 0.94 97057 20 937 95270 0.97 96207 21 1130 91067 1.23 92197 22 1006 98729 1.01 99735 23 910 98264 0.92 99174 24 795 87857 0.90 88652 25 801 89160 0.89 89961 26 960 93311 1.02 94271 27 785 87494 0.89 88279 28 723 83468 0.86 84191 29 824 89814 0.91 90638 30 767 86700 0.88 87467 31 808 81994 0.98 82802 32 678 83622 0.80 84300 33 858 98312 0.87 99170 34 709 81386 0.86 82095 35 753 84718 0.88 85471 36 755 84986 0.88 85741 37 678 77675 0.87 78353 38 743 82046 0.90 82789 39 734 75545 0.96 76279 40 725 74760 0.96 75485 41 691 73205 0.94 73896 42 679 69314 0.97 69993 43 704 71725 0.97 72429 44 693 70913 0.97 71606 45 636 67505 0.93 68141 46 573 67374 0.84 67947 47 681 68292 0.99 68973 48 694 66314 1.04 67008 49 709 69237 1.01 69946 50 672 66084 1.01 66756 51 615 62952 0.97 63567 52 627 60900 1.02 61527 53 631 67804 0.92 68435 54 628 62500 0.99 63128 55 533 61297 0.86 61830 56 582 62077 0.93 62659 57 733 58866 1.23 59599 58 595 57958 1.02 58553 59 600 59461 1.00 60061 60 645 57702 1.11 58347 61 569 57773 0.98 58342 62 574 58824 0.97 59398 63 600 57671 1.03 58271 64 477 53680 0.88 54157 65 581 55476 1.04 56057 66 474 52165 0.90 52639 67 552 56062 0.98 56614 68 513 53408 0.95 53921 69 478 53524 0.89 54002 70 525 53428 0.97 53953 71 504 54354 0.92 54858 72 470 50503 0.92 50973 73 462 48946 0.94 49408 74 455 51371 0.88 51826 75 447 48916 0.91 49363 76 415 47397 0.87 47812 77 475 49855 0.94 50330 78 438 46579 0.93 47017 79 456 46419 0.97 46875 80 425 45187 0.93 45612 81 399 44240 0.89 44639 82 434 43488 0.99 43922 83 432 43539 0.98 43971 84 423 42686 0.98 43109 85 410 47014 0.86 47424 86 390 42480 0.91 42870 87 393 42476 0.92 42869 88 361 40013 0.89 40374 89 396 42073 0.93 42469 90 439 41627 1.04 42066 91 390 43064 0.90 43454 92 395 40679 0.96 41074 93 324 39012 0.82 39336 94 354 38130 0.92 38484 95 378 39472 0.95 39850 96 377 36949 1.01 37326 97 366 36917 0.98 37283 98 324 36549 0.88 36873 99 245 0 100.00 245 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29326 134327 17.92 163653 2 24191 109418 18.11 133609 3 24502 111544 18.01 136046 4 24120 106765 18.43 130885 5 5658 217933 2.53 223591 6 5366 296466 1.78 301832 7 5852 405020 1.42 410872 8 6323 398390 1.56 404713 9 6312 372485 1.67 378797 10 6133 383732 1.57 389865 11 6120 375114 1.61 381234 12 6115 350818 1.71 356933 13 5898 361561 1.61 367459 14 5724 360091 1.56 365815 15 5701 369461 1.52 375162 16 5403 355221 1.50 360624 17 5619 352924 1.57 358543 18 5504 352059 1.54 357563 19 5318 326422 1.60 331740 20 5481 343656 1.57 349137 21 5192 325691 1.57 330883 22 5393 313159 1.69 318552 23 5087 308404 1.62 313491 24 4827 296326 1.60 301153 25 5236 295163 1.74 300399 26 4981 292951 1.67 297932 27 5152 314167 1.61 319319 28 4838 296070 1.61 300908 29 4785 290538 1.62 295323 30 4867 282049 1.70 286916 31 4648 278034 1.64 282682 32 4491 269462 1.64 273953 33 4444 266054 1.64 270498 34 4650 265122 1.72 269772 35 4962 272876 1.79 277838 36 4249 267736 1.56 271985 37 4342 266276 1.60 270618 38 4624 280117 1.62 284741 39 4462 255958 1.71 260420 40 4408 269156 1.61 273564 41 4354 252490 1.70 256844 42 4205 257190 1.61 261395 43 4355 245073 1.75 249428 44 4081 241608 1.66 245689 45 4132 242869 1.67 247001 46 3825 244845 1.54 248670 47 3906 238913 1.61 242819 48 3878 233500 1.63 237378 49 3846 239076 1.58 242922 50 3923 233474 1.65 237397 51 3820 228347 1.65 232167 52 3588 217674 1.62 221262 53 3495 216540 1.59 220035 54 3333 211548 1.55 214881 55 3541 219689 1.59 223230 56 3369 210575 1.57 213944 57 3343 218186 1.51 221529 58 3244 209681 1.52 212925 59 3315 201373 1.62 204688 60 3322 207909 1.57 211231 61 3279 198590 1.62 201869 62 3170 196522 1.59 199692 63 3187 197715 1.59 200902 64 3135 190773 1.62 193908 65 3049 193180 1.55 196229 66 2970 185409 1.58 188379 67 2896 186573 1.53 189469 68 3057 193703 1.55 196760 69 2948 186280 1.56 189228 70 2923 179871 1.60 182794 71 2948 177600 1.63 180548 72 2706 175470 1.52 178176 73 2813 174214 1.59 177027 74 2674 175429 1.50 178103 75 2565 172748 1.46 175313 76 2593 166086 1.54 168679 77 2683 165785 1.59 168468 78 2712 165396 1.61 168108 79 2543 168095 1.49 170638 80 2688 162364 1.63 165052 81 2594 162535 1.57 165129 82 2537 159641 1.56 162178 83 2556 159001 1.58 161557 84 2555 156702 1.60 159257 85 2392 155066 1.52 157458 86 2403 153949 1.54 156352 87 2389 152071 1.55 154460 88 2268 147227 1.52 149495 89 2359 147343 1.58 149702 90 2254 145707 1.52 147961 91 2251 144499 1.53 146750 92 2226 142952 1.53 145178 93 2135 140789 1.49 142924 94 2108 139321 1.49 141429 95 2052 136807 1.48 138859 96 2053 134519 1.50 136572 97 1939 134593 1.42 136532 98 1654 129431 1.26 131085 99 1202 0 100.00 1202