CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 139465 218413 38.97 357878 2 133454 238805 35.85 372259 3 132156 215208 38.05 347364 4 139979 178327 43.98 318306 5 135887 153096 47.02 288983 6 135162 129406 51.09 264568 7 148956 129727 53.45 278683 8 75877 142742 34.71 218619 9 67118 132785 33.58 199903 10 68355 131836 34.14 200191 11 71391 134231 34.72 205622 12 68500 137140 33.31 205640 13 68366 140493 32.73 208859 14 65287 141886 31.51 207173 15 63520 142440 30.84 205960 16 59592 141457 29.64 201049 17 57102 138126 29.25 195228 18 58019 141760 29.04 199779 19 57039 141610 28.71 198649 20 57825 143971 28.66 201796 21 57875 143983 28.67 201858 22 56677 143070 28.37 199747 23 56465 142198 28.42 198663 24 55626 142076 28.14 197702 25 55543 140470 28.34 196013 26 55030 138747 28.40 193777 27 54774 142625 27.75 197399 28 56559 140874 28.65 197433 29 54702 143227 27.64 197929 30 54384 142162 27.67 196546 31 55120 138968 28.40 194088 32 53826 136994 28.21 190820 33 54543 137456 28.41 191999 34 55589 137270 28.82 192859 35 54457 136538 28.51 190995 36 53980 138157 28.09 192137 37 52724 135759 27.97 188483 38 52330 134215 28.05 186545 39 53609 136284 28.23 189893 40 52915 134713 28.20 187628 41 52957 133876 28.34 186833 42 54251 136166 28.49 190417 43 53067 134216 28.34 187283 44 52510 132666 28.36 185176 45 53065 132275 28.63 185340 46 53679 133788 28.63 187467 47 51773 128873 28.66 180646 48 51880 130493 28.45 182373 49 52962 130903 28.80 183865 50 51811 131268 28.30 183079 51 51418 129937 28.35 181355 52 52403 133313 28.22 185716 53 50428 127471 28.35 177899 54 49707 126016 28.29 175723 55 49425 122402 28.76 171827 56 48331 121565 28.45 169896 57 49221 121917 28.76 171138 58 48504 121920 28.46 170424 59 48751 120305 28.84 169056 60 47279 119896 28.28 167175 61 47536 117379 28.82 164915 62 46914 118152 28.42 165066 63 45853 116349 28.27 162202 64 45155 115964 28.03 161119 65 45559 114227 28.51 159786 66 46100 114485 28.71 160585 67 44876 111119 28.77 155995 68 44037 111305 28.35 155342 69 43958 110142 28.53 154100 70 43281 109665 28.30 152946 71 42438 107504 28.30 149942 72 41697 106960 28.05 148657 73 41666 104746 28.46 146412 74 41117 104125 28.31 145242 75 39846 103262 27.84 143108 76 39669 101684 28.06 141353 77 39906 100174 28.49 140080 78 39767 99829 28.49 139596 79 39067 98888 28.32 137955 80 38072 98809 27.81 136881 81 37865 97415 27.99 135280 82 36917 95576 27.86 132493 83 37106 95779 27.92 132885 84 36663 95634 27.71 132297 85 36923 93897 28.22 130820 86 35201 91756 27.73 126957 87 34514 90621 27.58 125135 88 34637 90803 27.61 125440 89 33736 88977 27.49 122713 90 33845 89032 27.54 122877 91 33340 86869 27.74 120209 92 33022 86962 27.52 119984 93 32638 86710 27.35 119348 94 32602 85297 27.65 117899 95 31978 84638 27.42 116616 96 31886 84705 27.35 116591 97 31082 81499 27.61 112581 98 28745 76320 27.36 105065 99 22889 59815 27.68 82704 100 29427 76017 27.91 105444 101 26838 75253 26.29 102091 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 180112 301538 37.39 481650 2 108838 284694 27.66 393532 3 52106 279034 15.74 331140 4 27585 279801 8.97 307386 5 17119 253411 6.33 270530 6 15519 246555 5.92 262074 7 10322 293864 3.39 304186 8 4781 315455 1.49 320236 9 4032 300930 1.32 304962 10 4091 294919 1.37 299010 11 4174 299150 1.38 303324 12 4045 299705 1.33 303750 13 3730 292513 1.26 296243 14 3386 290435 1.15 293821 15 3379 296342 1.13 299721 16 3007 296005 1.01 299012 17 2985 292647 1.01 295632 18 3012 292543 1.02 295555 19 2886 290472 0.98 293358 20 3028 303488 0.99 306516 21 2995 305791 0.97 308786 22 3161 302779 1.03 305940 23 3131 306658 1.01 309789 24 2953 309314 0.95 312267 25 3010 301639 0.99 304649 26 3283 302775 1.07 306058 27 3079 307844 0.99 310923 28 2942 304463 0.96 307405 29 3219 307582 1.04 310801 30 3019 311175 0.96 314194 31 3137 301824 1.03 304961 32 3152 307078 1.02 310230 33 3130 307635 1.01 310765 34 3201 302179 1.05 305380 35 3476 302284 1.14 305760 36 3244 304575 1.05 307819 37 3363 295030 1.13 298393 38 3407 300461 1.12 303868 39 3378 297414 1.12 300792 40 3159 295972 1.06 299131 41 3290 295161 1.10 298451 42 3265 295976 1.09 299241 43 3313 290950 1.13 294263 44 3298 293243 1.11 296541 45 3576 292558 1.21 296134 46 3499 287797 1.20 291296 47 3584 287800 1.23 291384 48 3520 291793 1.19 295313 49 3534 283615 1.23 287149 50 3603 282364 1.26 285967 51 3499 285455 1.21 288954 52 3537 282727 1.24 286264 53 3637 278226 1.29 281863 54 3613 281579 1.27 285192 55 3550 274807 1.28 278357 56 3631 276337 1.30 279968 57 3635 273992 1.31 277627 58 3587 270983 1.31 274570 59 3650 270205 1.33 273855 60 3562 269623 1.30 273185 61 3523 265524 1.31 269047 62 3662 264047 1.37 267709 63 3618 261549 1.36 265167 64 3620 260711 1.37 264331 65 3782 258275 1.44 262057 66 3472 253695 1.35 257167 67 3454 246809 1.38 250263 68 3644 249056 1.44 252700 69 3579 246299 1.43 249878 70 3398 240930 1.39 244328 71 3374 239825 1.39 243199 72 3200 238982 1.32 242182 73 3322 234455 1.40 237777 74 3397 230629 1.45 234026 75 3253 231350 1.39 234603 76 3044 225236 1.33 228280 77 3204 224848 1.40 228052 78 3160 221906 1.40 225066 79 3132 217758 1.42 220890 80 3115 216011 1.42 219126 81 3106 213873 1.43 216979 82 3014 210062 1.41 213076 83 3133 212124 1.46 215257 84 3096 211552 1.44 214648 85 3181 206607 1.52 209788 86 3001 206813 1.43 209814 87 3002 206841 1.43 209843 88 3122 202001 1.52 205123 89 3023 199784 1.49 202807 90 2937 197918 1.46 200855 91 3004 194835 1.52 197839 92 2941 195802 1.48 198743 93 3061 191930 1.57 194991 94 2924 188127 1.53 191051 95 2939 185692 1.56 188631 96 2990 185338 1.59 188328 97 2761 168490 1.61 171251 98 2534 153472 1.62 156006 99 1666 99700 1.64 101366 100 1924 101520 1.86 103444 101 3960 167114 2.31 171074 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 230387 445762 34.07 676149 2 118781 471416 20.13 590197 3 61603 533937 10.34 595540 4 48662 568460 7.89 617122 5 44685 655093 6.39 699778 6 35263 699738 4.80 735001 7 29538 856769 3.33 886307 8 18963 913886 2.03 932849 9 14544 853845 1.67 868389 10 14228 840402 1.66 854630 11 16404 839195 1.92 855599 12 13774 848177 1.60 861951 13 15325 856089 1.76 871414 14 16652 878150 1.86 894802 15 14262 894214 1.57 908476 16 13942 903886 1.52 917828 17 16009 909139 1.73 925148 18 13788 938227 1.45 952015 19 13792 951626 1.43 965418 20 15809 980459 1.59 996268 21 13745 981951 1.38 995696 22 14526 984597 1.45 999123 23 16067 983540 1.61 999607 24 13917 984736 1.39 998653 25 14404 989905 1.43 1004309 26 16317 994827 1.61 1011144 27 14016 998020 1.38 1012036 28 13745 999082 1.36 1012827 29 15919 996634 1.57 1012553 30 13830 989866 1.38 1003696 31 14461 974740 1.46 989201 32 15719 979278 1.58 994997 33 13835 974242 1.40 988077 34 14930 979845 1.50 994775 35 15924 968124 1.62 984048 36 13847 976369 1.40 990216 37 14346 965189 1.46 979535 38 15618 965356 1.59 980974 39 13428 957790 1.38 971218 40 13758 954107 1.42 967865 41 15645 956554 1.61 972199 42 14038 959611 1.44 973649 43 14530 946436 1.51 960966 44 15301 947716 1.59 963017 45 13871 937016 1.46 950887 46 13885 934927 1.46 948812 47 15152 927211 1.61 942363 48 13248 924427 1.41 937675 49 13425 912084 1.45 925509 50 14777 903878 1.61 918655 51 12745 895010 1.40 907755 52 13855 887781 1.54 901636 53 14817 876809 1.66 891626 54 13302 875970 1.50 889272 55 13393 866730 1.52 880123 56 14697 863099 1.67 877796 57 12613 867240 1.43 879853 58 13240 858664 1.52 871904 59 14628 859070 1.67 873698 60 12335 846173 1.44 858508 61 13081 838680 1.54 851761 62 13877 827144 1.65 841021 63 12419 819586 1.49 832005 64 12996 809447 1.58 822443 65 13869 803795 1.70 817664 66 12008 794778 1.49 806786 67 12339 788334 1.54 800673 68 13307 784070 1.67 797377 69 11567 776578 1.47 788145 70 11888 769154 1.52 781042 71 12908 763265 1.66 776173 72 11639 756524 1.52 768163 73 12299 742184 1.63 754483 74 12587 741395 1.67 753982 75 11122 734121 1.49 745243 76 11280 728732 1.52 740012 77 12574 719211 1.72 731785 78 10544 713416 1.46 723960 79 10948 709092 1.52 720040 80 12096 700458 1.70 712554 81 10813 690020 1.54 700833 82 10980 681248 1.59 692228 83 11816 678442 1.71 690258 84 10465 669805 1.54 680270 85 10894 658399 1.63 669293 86 11243 652602 1.69 663845 87 10114 647565 1.54 657679 88 10424 640168 1.60 650592 89 11232 631532 1.75 642764 90 9570 628369 1.50 637939 91 9967 620389 1.58 630356 92 10541 615313 1.68 625854 93 9303 609528 1.50 618831 94 9695 599126 1.59 608821 95 10298 590901 1.71 601199 96 8915 580676 1.51 589591 97 8817 562554 1.54 571371 98 9134 521348 1.72 530482 99 5688 360937 1.55 366625 100 6290 321620 1.92 327910 101 9663 524631 1.81 534294 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 105907 109681 49.12 215588 2 88971 90615 49.54 179586 3 96684 103421 48.32 200105 4 86498 113665 43.21 200163 5 38382 144856 20.95 183238 6 23499 79461 22.82 102960 7 20601 84351 19.63 104952 8 21162 76898 21.58 98060 9 18691 67947 21.57 86638 10 20267 73867 21.53 94134 11 21953 71729 23.43 93682 12 21439 68902 23.73 90341 13 21624 67724 24.20 89348 14 22527 68951 24.63 91478 15 22284 63280 26.04 85564 16 20784 60236 25.65 81020 17 24776 65605 27.41 90381 18 23930 64307 27.12 88237 19 22448 62301 26.49 84749 20 20755 59970 25.71 80725 21 22290 57939 27.78 80229 22 22060 59565 27.03 81625 23 21110 57433 26.88 78543 24 19301 54184 26.27 73485 25 21234 57263 27.05 78497 26 19675 53795 26.78 73470 27 21016 54501 27.83 75517 28 19459 52023 27.22 71482 29 20155 54124 27.13 74279 30 19406 50703 27.68 70109 31 18590 51353 26.58 69943 32 17914 48041 27.16 65955 33 20439 49635 29.17 70074 34 19270 51533 27.22 70803 35 23121 55330 29.47 78451 36 19417 49246 28.28 68663 37 20045 50464 28.43 70509 38 17810 47531 27.26 65341 39 17972 46968 27.67 64940 40 20031 47041 29.86 67072 41 17555 46527 27.39 64082 42 17976 47759 27.35 65735 43 17544 45896 27.65 63440 44 16662 44731 27.14 61393 45 20658 49685 29.37 70343 46 16029 41424 27.90 57453 47 16179 41740 27.93 57919 48 16302 42864 27.55 59166 49 15916 42152 27.41 58068 50 15235 40524 27.32 55759 51 15031 39517 27.56 54548 52 14595 39730 26.87 54325 53 15308 38992 28.19 54300 54 15244 38948 28.13 54192 55 15463 39328 28.22 54791 56 14115 37718 27.23 51833 57 14854 38260 27.97 53114 58 14498 37418 27.93 51916 59 13807 35263 28.14 49070 60 14187 35963 28.29 50150 61 12705 34877 26.70 47582 62 12700 34209 27.07 46909 63 14045 34348 29.02 48393 64 12922 33605 27.77 46527 65 12647 31600 28.58 44247 66 13283 33209 28.57 46492 67 12267 33979 26.53 46246 68 13814 34608 28.53 48422 69 12154 31032 28.14 43186 70 11671 30845 27.45 42516 71 12316 30339 28.87 42655 72 11364 29864 27.56 41228 73 11713 30166 27.97 41879 74 10188 28573 26.28 38761 75 10477 28380 26.96 38857 76 10898 27795 28.17 38693 77 10425 27729 27.32 38154 78 10442 27946 27.20 38388 79 10156 27253 27.15 37409 80 10027 26910 27.15 36937 81 9922 26423 27.30 36345 82 9790 26432 27.03 36222 83 9859 25800 27.65 35659 84 11172 28059 28.48 39231 85 9494 25499 27.13 34993 86 9464 25193 27.31 34657 87 9445 24268 28.02 33713 88 9158 24081 27.55 33239 89 9974 24884 28.61 34858 90 9873 24365 28.84 34238 91 8936 23926 27.19 32862 92 8537 23119 26.97 31656 93 8720 23017 27.48 31737 94 9038 23415 27.85 32453 95 8792 22802 27.83 31594 96 8593 22730 27.43 31323 97 9406 23794 28.33 33200 98 8379 20984 28.54 29363 99 7372 0 100.00 7372 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 27775 140270 16.53 168045 2 28036 142620 16.43 170656 3 26123 142521 15.49 168644 4 28294 151270 15.76 179564 5 2740 276503 0.98 279243 6 2194 338625 0.64 340819 7 1298 185761 0.69 187059 8 1431 197626 0.72 199057 9 1177 163866 0.71 165043 10 1180 156971 0.75 158151 11 1620 212298 0.76 213918 12 1284 166801 0.76 168085 13 1304 163994 0.79 165298 14 1255 157593 0.79 158848 15 1258 151628 0.82 152886 16 1159 141105 0.81 142264 17 1279 151218 0.84 152497 18 1285 134577 0.95 135862 19 1209 131394 0.91 132603 20 1175 130430 0.89 131605 21 1236 124428 0.98 125664 22 1195 134626 0.88 135821 23 1158 134753 0.85 135911 24 1014 119843 0.84 120857 25 1061 121422 0.87 122483 26 1084 127381 0.84 128465 27 1006 119584 0.83 120590 28 966 114925 0.83 115891 29 1037 121352 0.85 122389 30 1030 118042 0.87 119072 31 994 112874 0.87 113868 32 885 113865 0.77 114750 33 973 134622 0.72 135595 34 911 111289 0.81 112200 35 1017 115080 0.88 116097 36 994 115785 0.85 116779 37 848 105953 0.79 106801 38 977 111621 0.87 112598 39 899 103019 0.87 103918 40 858 102034 0.83 102892 41 879 100274 0.87 101153 42 905 95383 0.94 96288 43 829 98193 0.84 99022 44 808 96432 0.83 97240 45 765 92055 0.82 92820 46 786 91451 0.85 92237 47 819 94075 0.86 94894 48 870 90289 0.95 91159 49 783 93851 0.83 94634 50 826 89834 0.91 90660 51 771 85078 0.90 85849 52 771 83549 0.91 84320 53 804 92698 0.86 93502 54 768 84953 0.90 85721 55 741 83418 0.88 84159 56 812 84424 0.95 85236 57 819 80438 1.01 81257 58 700 78751 0.88 79451 59 698 81013 0.85 81711 60 759 78526 0.96 79285 61 704 78400 0.89 79104 62 675 79895 0.84 80570 63 731 78594 0.92 79325 64 626 73816 0.84 74442 65 726 75420 0.95 76146 66 660 71302 0.92 71962 67 679 76517 0.88 77196 68 665 73378 0.90 74043 69 605 72919 0.82 73524 70 682 72135 0.94 72817 71 680 73282 0.92 73962 72 569 68806 0.82 69375 73 582 66770 0.86 67352 74 588 69799 0.84 70387 75 558 66794 0.83 67352 76 516 64039 0.80 64555 77 575 67147 0.85 67722 78 577 62327 0.92 62904 79 535 63122 0.84 63657 80 557 61437 0.90 61994 81 531 60103 0.88 60634 82 577 58922 0.97 59499 83 526 59911 0.87 60437 84 450 57391 0.78 57841 85 556 63445 0.87 64001 86 540 57415 0.93 57955 87 464 57211 0.80 57675 88 463 54087 0.85 54550 89 525 56631 0.92 57156 90 544 55586 0.97 56130 91 506 58308 0.86 58814 92 486 54868 0.88 55354 93 485 52665 0.91 53150 94 438 51724 0.84 52162 95 513 53175 0.96 53688 96 440 50203 0.87 50643 97 451 50214 0.89 50665 98 419 49933 0.83 50352 99 312 0 100.00 312 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 38280 189410 16.81 227690 2 30761 156948 16.39 187709 3 30892 157865 16.37 188757 4 31004 152362 16.91 183366 5 5596 308721 1.78 314317 6 5293 414689 1.26 419982 7 6210 568397 1.08 574607 8 6336 556129 1.13 562465 9 6450 522477 1.22 528927 10 6427 535403 1.19 541830 11 6245 524499 1.18 530744 12 6061 490881 1.22 496942 13 5944 505345 1.16 511289 14 5823 505441 1.14 511264 15 6095 516927 1.17 523022 16 5754 497977 1.14 503731 17 6022 492848 1.21 498870 18 5986 490483 1.21 496469 19 5371 454612 1.17 459983 20 5792 480753 1.19 486545 21 5584 455611 1.21 461195 22 5413 436521 1.22 441934 23 5214 428834 1.20 434048 24 5127 413483 1.22 418610 25 5260 410358 1.27 415618 26 5085 409508 1.23 414593 27 5458 438368 1.23 443826 28 4992 412924 1.19 417916 29 4956 404248 1.21 409204 30 4999 393387 1.25 398386 31 4715 387442 1.20 392157 32 4577 376310 1.20 380887 33 4701 372189 1.25 376890 34 4741 369656 1.27 374397 35 5186 380687 1.34 385873 36 4605 374950 1.21 379555 37 4600 372485 1.22 377085 38 4751 390537 1.20 395288 39 4514 355951 1.25 360465 40 4509 373734 1.19 378243 41 4417 350179 1.25 354596 42 4433 358671 1.22 363104 43 4314 341281 1.25 345595 44 4219 336671 1.24 340890 45 4280 338048 1.25 342328 46 4100 341106 1.19 345206 47 4065 331466 1.21 335531 48 4200 326454 1.27 330654 49 3970 332102 1.18 336072 50 3896 323096 1.19 326992 51 3917 315871 1.22 319788 52 3779 302063 1.24 305842 53 3595 301219 1.18 304814 54 3550 295519 1.19 299069 55 3633 306345 1.17 309978 56 3588 293608 1.21 297196 57 3531 302834 1.15 306365 58 3466 290590 1.18 294056 59 3486 278568 1.24 282054 60 3565 289545 1.22 293110 61 3233 275200 1.16 278433 62 3264 272782 1.18 276046 63 3265 275513 1.17 278778 64 3193 264044 1.19 267237 65 3211 269097 1.18 272308 66 3190 258740 1.22 261930 67 3022 259593 1.15 262615 68 3223 267851 1.19 271074 69 3187 258933 1.22 262120 70 2925 247822 1.17 250747 71 2972 246542 1.19 249514 72 3008 244472 1.22 247480 73 2812 242617 1.15 245429 74 2773 242108 1.13 244881 75 2810 240656 1.15 243466 76 2722 231063 1.16 233785 77 2781 229007 1.20 231788 78 2844 230166 1.22 233010 79 2833 234014 1.20 236847 80 2740 224692 1.20 227432 81 2884 224890 1.27 227774 82 2660 221216 1.19 223876 83 2672 219437 1.20 222109 84 2655 217241 1.21 219896 85 2597 214022 1.20 216619 86 2542 211927 1.19 214469 87 2590 210699 1.21 213289 88 2319 204020 1.12 206339 89 2470 202667 1.20 205137 90 2382 200864 1.17 203246 91 2442 200690 1.20 203132 92 2316 197278 1.16 199594 93 2347 195424 1.19 197771 94 2245 192855 1.15 195100 95 2216 189638 1.16 191854 96 2222 185179 1.19 187401 97 2104 185863 1.12 187967 98 1752 176872 0.98 178624 99 1322 0 100.00 1322