CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 83575 126167 39.85 209742 2 80062 137255 36.84 217317 3 75528 116962 39.24 192490 4 78277 91598 46.08 169875 5 77297 79365 49.34 156662 6 76861 66637 53.56 143498 7 88023 69136 56.01 157159 8 41380 74361 35.75 115741 9 36317 68338 34.70 104655 10 36656 65948 35.73 102604 11 37975 68212 35.76 106187 12 37276 69250 34.99 106526 13 37003 72678 33.74 109681 14 34841 71300 32.83 106141 15 34541 72680 32.21 107221 16 31993 71286 30.98 103279 17 30115 69769 30.15 99884 18 31307 70561 30.73 101868 19 30592 71548 29.95 102140 20 31034 71926 30.14 102960 21 30836 73182 29.64 104018 22 30518 71758 29.84 102276 23 30722 71849 29.95 102571 24 30005 71074 29.68 101079 25 29284 70904 29.23 100188 26 29529 69768 29.74 99297 27 29722 72296 29.13 102018 28 30287 71157 29.86 101444 29 29370 73944 28.43 103314 30 28884 72124 28.60 101008 31 29502 70797 29.41 100299 32 28743 69006 29.40 97749 33 29117 69730 29.46 98847 34 29537 69130 29.94 98667 35 29260 68654 29.88 97914 36 28685 69568 29.20 98253 37 28379 68354 29.34 96733 38 27745 68019 28.97 95764 39 28898 69595 29.34 98493 40 28483 68020 29.52 96503 41 28285 68316 29.28 96601 42 28990 69517 29.43 98507 43 28464 68273 29.42 96737 44 28186 67625 29.42 95811 45 28504 67359 29.73 95863 46 28696 68594 29.50 97290 47 28055 66878 29.55 94933 48 27974 66772 29.53 94746 49 29006 67054 30.20 96060 50 27800 68562 28.85 96362 51 28013 67530 29.32 95543 52 28419 70460 28.74 98879 53 27383 66556 29.15 93939 54 26873 65771 29.01 92644 55 26998 64101 29.64 91099 56 26813 63419 29.72 90232 57 26767 64359 29.37 91126 58 26864 63840 29.62 90704 59 27259 63505 30.03 90764 60 26456 63403 29.44 89859 61 26231 62942 29.42 89173 62 25669 63082 28.92 88751 63 25544 61747 29.26 87291 64 25171 62152 28.83 87323 65 25258 60911 29.31 86169 66 25766 61292 29.60 87058 67 25415 60071 29.73 85486 68 24926 60378 29.22 85304 69 24950 59487 29.55 84437 70 24482 59198 29.26 83680 71 23988 58283 29.16 82271 72 23846 58356 29.01 82202 73 23746 56823 29.47 80569 74 23328 56583 29.19 79911 75 23042 56064 29.13 79106 76 22957 56064 29.05 79021 77 23098 55270 29.47 78368 78 23154 55396 29.48 78550 79 22784 54478 29.49 77262 80 22322 54345 29.12 76667 81 22220 53681 29.27 75901 82 21460 53332 28.69 74792 83 22183 53790 29.20 75973 84 21741 53173 29.02 74914 85 21635 52766 29.08 74401 86 21005 51602 28.93 72607 87 20642 51368 28.67 72010 88 20420 51099 28.55 71519 89 20164 50735 28.44 70899 90 20403 50229 28.89 70632 91 19953 49499 28.73 69452 92 19906 49236 28.79 69142 93 19477 49184 28.37 68661 94 19537 48391 28.76 67928 95 19169 48289 28.42 67458 96 19508 48792 28.56 68300 97 18583 46719 28.46 65302 98 17418 43663 28.52 61081 99 13871 34521 28.66 48392 100 17792 43819 28.88 61611 101 16625 43530 27.64 60155 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 109390 150886 42.03 260276 2 63633 139944 31.26 203577 3 28041 135316 17.17 163357 4 15348 139012 9.94 154360 5 9839 127708 7.15 137547 6 10820 124554 7.99 135374 7 6126 152350 3.87 158476 8 2863 164445 1.71 167308 9 2334 156148 1.47 158482 10 2328 150523 1.52 152851 11 2460 153479 1.58 155939 12 2459 153616 1.58 156075 13 2087 148442 1.39 150529 14 1935 148065 1.29 150000 15 1956 151393 1.28 153349 16 1702 150777 1.12 152479 17 1721 148602 1.14 150323 18 1689 148526 1.12 150215 19 1591 148863 1.06 150454 20 1739 155952 1.10 157691 21 1715 157421 1.08 159136 22 1805 155959 1.14 157764 23 1720 157415 1.08 159135 24 1729 157749 1.08 159478 25 1706 153942 1.10 155648 26 2194 155245 1.39 157439 27 1668 157256 1.05 158924 28 1644 155675 1.05 157319 29 1856 157444 1.17 159300 30 1643 158990 1.02 160633 31 1633 155279 1.04 156912 32 1638 156815 1.03 158453 33 1739 157476 1.09 159215 34 1730 155173 1.10 156903 35 1988 155241 1.26 157229 36 1741 155601 1.11 157342 37 1813 152389 1.18 154202 38 2070 153630 1.33 155700 39 1671 153798 1.07 155469 40 1609 152698 1.04 154307 41 1663 153081 1.07 154744 42 1717 152434 1.11 154151 43 1675 150862 1.10 152537 44 1735 153607 1.12 155342 45 1811 152354 1.17 154165 46 1864 150518 1.22 152382 47 1822 150002 1.20 151824 48 1747 153066 1.13 154813 49 1700 149320 1.13 151020 50 1858 149444 1.23 151302 51 1740 150885 1.14 152625 52 1860 149967 1.23 151827 53 1860 148084 1.24 149944 54 1898 149607 1.25 151505 55 1807 147157 1.21 148964 56 1942 147384 1.30 149326 57 1833 146977 1.23 148810 58 1834 146298 1.24 148132 59 1980 145665 1.34 147645 60 1776 145957 1.20 147733 61 1904 144642 1.30 146546 62 1961 145641 1.33 147602 63 1923 143669 1.32 145592 64 1982 143729 1.36 145711 65 2334 142863 1.61 145197 66 1996 140190 1.40 142186 67 1999 135880 1.45 137879 68 2177 137037 1.56 139214 69 1866 136945 1.34 138811 70 1805 134515 1.32 136320 71 1791 133655 1.32 135446 72 1819 132825 1.35 134644 73 1821 131716 1.36 133537 74 2086 130412 1.57 132498 75 1801 130403 1.36 132204 76 1704 127324 1.32 129028 77 1959 126773 1.52 128732 78 1808 125483 1.42 127291 79 1707 123269 1.37 124976 80 1726 122895 1.38 124621 81 1729 121516 1.40 123245 82 1757 119340 1.45 121097 83 1795 121448 1.46 123243 84 1799 120827 1.47 122626 85 1832 118123 1.53 119955 86 1859 119896 1.53 121755 87 1850 120543 1.51 122393 88 1859 117292 1.56 119151 89 1833 115826 1.56 117659 90 1712 115943 1.46 117655 91 1688 114007 1.46 115695 92 1773 113908 1.53 115681 93 1796 112391 1.57 114187 94 1787 110396 1.59 112183 95 1803 109009 1.63 110812 96 1729 109055 1.56 110784 97 1701 98946 1.69 100647 98 1583 90651 1.72 92234 99 947 58877 1.58 59824 100 1141 59196 1.89 60337 101 2354 98842 2.33 101196 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118698 203253 36.87 321951 2 65359 213987 23.40 279346 3 37179 254186 12.76 291365 4 32735 269928 10.82 302663 5 32922 316134 9.43 349056 6 25981 342094 7.06 368075 7 20914 431086 4.63 452000 8 15894 464721 3.31 480615 9 11522 432454 2.60 443976 10 11155 425623 2.55 436778 11 14435 427104 3.27 441539 12 11455 431109 2.59 442564 13 13211 441726 2.90 454937 14 15090 451757 3.23 466847 15 12209 462694 2.57 474903 16 12024 467121 2.51 479145 17 14900 471398 3.06 486298 18 11724 488425 2.34 500149 19 11718 495655 2.31 507373 20 14319 509880 2.73 524199 21 11894 510126 2.28 522020 22 13054 510696 2.49 523750 23 14906 512090 2.83 526996 24 12101 513753 2.30 525854 25 12981 516454 2.45 529435 26 15354 520998 2.86 536352 27 12151 522366 2.27 534517 28 11853 524356 2.21 536209 29 14770 521501 2.75 536271 30 12083 515945 2.29 528028 31 12517 508880 2.40 521397 32 14314 513447 2.71 527761 33 11966 509560 2.29 521526 34 13632 513261 2.59 526893 35 14741 507544 2.82 522285 36 12069 512411 2.30 524480 37 12006 507589 2.31 519595 38 14484 509807 2.76 524291 39 11664 505979 2.25 517643 40 12185 506162 2.35 518347 41 14420 507808 2.76 522228 42 12281 511649 2.34 523930 43 13226 504078 2.56 517304 44 14286 507198 2.74 521484 45 12366 499985 2.41 512351 46 12430 500720 2.42 513150 47 14146 497330 2.77 511476 48 11746 497100 2.31 508846 49 12157 489744 2.42 501901 50 13965 487055 2.79 501020 51 11232 482656 2.27 493888 52 12670 479624 2.57 492294 53 14065 474898 2.88 488963 54 11837 476575 2.42 488412 55 12195 473083 2.51 485278 56 14044 472560 2.89 486604 57 11322 480661 2.30 491983 58 12123 472585 2.50 484708 59 13865 477550 2.82 491415 60 10825 468876 2.26 479701 61 12260 465448 2.57 477708 62 13189 459297 2.79 472486 63 11314 456464 2.42 467778 64 12387 454244 2.65 466631 65 13585 450837 2.93 464422 66 10928 447510 2.38 458438 67 11272 444586 2.47 455858 68 13164 442606 2.89 455770 69 10474 439964 2.33 450438 70 11110 437518 2.48 448628 71 12717 434710 2.84 447427 72 10585 431601 2.39 442186 73 12166 425141 2.78 437307 74 12346 423135 2.84 435481 75 10522 419826 2.44 430348 76 10713 419808 2.49 430521 77 12816 415181 2.99 427997 78 9866 410878 2.34 420744 79 10397 408874 2.48 419271 80 12310 404724 2.95 417034 81 10369 400164 2.53 410533 82 11231 395629 2.76 406860 83 12258 396136 3.00 408394 84 10252 390652 2.56 400904 85 10706 383896 2.71 394602 86 11695 382886 2.96 394581 87 10045 380659 2.57 390704 88 10191 376471 2.64 386662 89 11621 373083 3.02 384704 90 9392 369707 2.48 379099 91 10060 364216 2.69 374276 92 10722 364604 2.86 375326 93 9237 359016 2.51 368253 94 9444 355421 2.59 364865 95 10874 350397 3.01 361271 96 8707 342642 2.48 351349 97 8786 333603 2.57 342389 98 9614 310227 3.01 319841 99 5550 214368 2.52 219918 100 6388 189823 3.26 196211 101 9503 315266 2.93 324769 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 61639 61253 50.16 122892 2 52245 51707 50.26 103952 3 57673 58222 49.76 115895 4 51109 64971 44.03 116080 5 23407 84202 21.75 107609 6 14515 46215 23.90 60730 7 12464 49106 20.24 61570 8 13167 45460 22.46 58627 9 11715 39670 22.80 51385 10 12844 43350 22.86 56194 11 13566 42100 24.37 55666 12 12956 40504 24.23 53460 13 13312 39761 25.08 53073 14 14031 39711 26.11 53742 15 13739 36624 27.28 50363 16 12956 35411 26.79 48367 17 15403 38793 28.42 54196 18 14606 37128 28.23 51734 19 13943 36170 27.82 50113 20 13172 35284 27.18 48456 21 14056 33850 29.34 47906 22 13893 34813 28.52 48706 23 13079 33234 28.24 46313 24 12257 31268 28.16 43525 25 13347 33738 28.35 47085 26 12579 31951 28.25 44530 27 13164 32240 28.99 45404 28 12250 30729 28.50 42979 29 12734 31621 28.71 44355 30 12283 29695 29.26 41978 31 11582 29791 27.99 41373 32 11320 28435 28.47 39755 33 12875 29235 30.57 42110 34 12174 30084 28.81 42258 35 14521 31967 31.24 46488 36 12103 28512 29.80 40615 37 12392 29205 29.79 41597 38 11161 28009 28.49 39170 39 11576 27554 29.58 39130 40 12636 27827 31.23 40463 41 11257 27576 28.99 38833 42 11188 27519 28.90 38707 43 10830 27131 28.53 37961 44 10305 26703 27.85 37008 45 13273 29079 31.34 42352 46 10228 24365 29.57 34593 47 10215 24701 29.26 34916 48 10504 24968 29.61 35472 49 9907 25015 28.37 34922 50 9425 23731 28.43 33156 51 9335 23238 28.66 32573 52 9508 23627 28.69 33135 53 9790 22923 29.93 32713 54 9647 23106 29.45 32753 55 9743 23203 29.57 32946 56 8939 22529 28.41 31468 57 9437 22677 29.39 32114 58 9080 21845 29.36 30925 59 8667 20650 29.56 29317 60 9247 21437 30.14 30684 61 7915 20576 27.78 28491 62 8146 20013 28.93 28159 63 8918 20350 30.47 29268 64 8325 19963 29.43 28288 65 8148 19210 29.78 27358 66 8636 19523 30.67 28159 67 7833 19845 28.30 27678 68 8653 20393 29.79 29046 69 7844 18345 29.95 26189 70 7421 18316 28.83 25737 71 7987 17700 31.09 25687 72 7211 17616 29.04 24827 73 7226 17872 28.79 25098 74 6725 16996 28.35 23721 75 6620 17008 28.02 23628 76 6833 16319 29.51 23152 77 6802 16512 29.18 23314 78 6859 16460 29.41 23319 79 6472 16286 28.44 22758 80 6401 16024 28.54 22425 81 6290 15814 28.46 22104 82 6272 15820 28.39 22092 83 6325 15173 29.42 21498 84 6978 16177 30.14 23155 85 6048 15221 28.44 21269 86 6140 14926 29.15 21066 87 5987 14375 29.40 20362 88 5852 14356 28.96 20208 89 6296 14578 30.16 20874 90 6299 14623 30.11 20922 91 5703 13973 28.98 19676 92 5585 13904 28.66 19489 93 5724 13643 29.56 19367 94 5712 13416 29.86 19128 95 5766 13760 29.53 19526 96 5676 13536 29.54 19212 97 6011 14061 29.95 20072 98 5327 12557 29.79 17884 99 4697 0 100.00 4697 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 16567 82806 16.67 99373 2 16497 84371 16.36 100868 3 15543 83291 15.73 98834 4 16314 88947 15.50 105261 5 1804 161676 1.10 163480 6 1331 202120 0.65 203451 7 855 110340 0.77 111195 8 924 117823 0.78 118747 9 801 98471 0.81 99272 10 816 93955 0.86 94771 11 1158 126465 0.91 127623 12 893 100187 0.88 101080 13 862 98847 0.86 99709 14 896 94997 0.93 95893 15 891 90308 0.98 91199 16 793 84839 0.93 85632 17 894 90586 0.98 91480 18 994 80504 1.22 81498 19 815 78992 1.02 79807 20 740 77956 0.94 78696 21 1086 74705 1.43 75791 22 825 80828 1.01 81653 23 790 80626 0.97 81416 24 641 72125 0.88 72766 25 689 73366 0.93 74055 26 804 76595 1.04 77399 27 714 72666 0.97 73380 28 618 68664 0.89 69282 29 688 73046 0.93 73734 30 682 70910 0.95 71592 31 581 67578 0.85 68159 32 625 68734 0.90 69359 33 707 80765 0.87 81472 34 612 67272 0.90 67884 35 698 69588 0.99 70286 36 647 70431 0.91 71078 37 584 63698 0.91 64282 38 683 67074 1.01 67757 39 614 62707 0.97 63321 40 579 62012 0.93 62591 41 557 60022 0.92 60579 42 605 57205 1.05 57810 43 549 58982 0.92 59531 44 520 58535 0.88 59055 45 546 55123 0.98 55669 46 484 55656 0.86 56140 47 511 56702 0.89 57213 48 546 54477 0.99 55023 49 553 55989 0.98 56542 50 521 54180 0.95 54701 51 542 51508 1.04 52050 52 554 50622 1.08 51176 53 551 56368 0.97 56919 54 470 52458 0.89 52928 55 502 51188 0.97 51690 56 488 51649 0.94 52137 57 602 49233 1.21 49835 58 455 47461 0.95 47916 59 505 48938 1.02 49443 60 603 48067 1.24 48670 61 471 47895 0.97 48366 62 599 48629 1.22 49228 63 479 47520 1.00 47999 64 448 45046 0.98 45494 65 471 46589 1.00 47060 66 446 43774 1.01 44220 67 454 46416 0.97 46870 68 452 44995 0.99 45447 69 446 44501 0.99 44947 70 404 43886 0.91 44290 71 414 44631 0.92 45045 72 400 42204 0.94 42604 73 361 41127 0.87 41488 74 356 42606 0.83 42962 75 408 40749 0.99 41157 76 367 39432 0.92 39799 77 421 41329 1.01 41750 78 370 38618 0.95 38988 79 369 38388 0.95 38757 80 385 38059 1.00 38444 81 368 36672 0.99 37040 82 354 36090 0.97 36444 83 369 36545 1.00 36914 84 324 35150 0.91 35474 85 302 38810 0.77 39112 86 361 34785 1.03 35146 87 343 34695 0.98 35038 88 344 33443 1.02 33787 89 333 34775 0.95 35108 90 416 34377 1.20 34793 91 344 35446 0.96 35790 92 318 33517 0.94 33835 93 286 32103 0.88 32389 94 300 32035 0.93 32335 95 328 32555 1.00 32883 96 332 31157 1.05 31489 97 299 30743 0.96 31042 98 271 30275 0.89 30546 99 211 0 100.00 211 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25543 114326 18.26 139869 2 21891 94042 18.88 115933 3 22668 94235 19.39 116903 4 22251 90106 19.80 112357 5 5836 182122 3.10 187958 6 5837 245979 2.32 251816 7 6076 337998 1.77 344074 8 6598 330752 1.96 337350 9 6937 312319 2.17 319256 10 6422 319902 1.97 326324 11 6433 314183 2.01 320616 12 6326 293924 2.11 300250 13 6307 304063 2.03 310370 14 5886 302313 1.91 308199 15 5911 310665 1.87 316576 16 5656 298006 1.86 303662 17 5711 295200 1.90 300911 18 5742 294034 1.92 299776 19 5508 273277 1.98 278785 20 5522 288737 1.88 294259 21 5591 273799 2.00 279390 22 5572 263660 2.07 269232 23 5321 260093 2.00 265414 24 4973 249869 1.95 254842 25 5395 249660 2.12 255055 26 5134 247905 2.03 253039 27 5389 265502 1.99 270891 28 4894 250467 1.92 255361 29 4889 244699 1.96 249588 30 5140 238297 2.11 243437 31 4846 234824 2.02 239670 32 4623 228586 1.98 233209 33 4850 225364 2.11 230214 34 4897 223330 2.15 228227 35 5090 231572 2.15 236662 36 4523 227839 1.95 232362 37 4543 225716 1.97 230259 38 4723 237045 1.95 241768 39 4694 216416 2.12 221110 40 4509 227331 1.94 231840 41 4467 214088 2.04 218555 42 4487 219171 2.01 223658 43 4428 207430 2.09 211858 44 4309 205437 2.05 209746 45 4295 206436 2.04 210731 46 4164 208962 1.95 213126 47 4028 203897 1.94 207925 48 4119 199574 2.02 203693 49 3974 204087 1.91 208061 50 3974 198585 1.96 202559 51 3890 194123 1.96 198013 52 3952 184910 2.09 188862 53 3623 184359 1.93 187982 54 3530 180915 1.91 184445 55 3530 186327 1.86 189857 56 3554 179153 1.95 182707 57 3565 185212 1.89 188777 58 3407 178454 1.87 181861 59 3523 172190 2.00 175713 60 3445 178121 1.90 181566 61 3489 169626 2.02 173115 62 3275 167604 1.92 170879 63 3345 168361 1.95 171706 64 3359 162953 2.02 166312 65 3174 164580 1.89 167754 66 3334 158294 2.06 161628 67 3106 158388 1.92 161494 68 3165 164871 1.88 168036 69 3187 159020 1.96 162207 70 2966 152972 1.90 155938 71 3000 151260 1.94 154260 72 2948 150726 1.92 153674 73 2969 149185 1.95 152154 74 2818 150547 1.84 153365 75 2792 147734 1.85 150526 76 2715 142177 1.87 144892 77 2832 141603 1.96 144435 78 2935 142105 2.02 145040 79 2644 144131 1.80 146775 80 2863 138414 2.03 141277 81 2843 138566 2.01 141409 82 2778 136726 1.99 139504 83 2755 134843 2.00 137598 84 2676 133527 1.96 136203 85 2607 132572 1.93 135179 86 2507 131280 1.87 133787 87 2565 129497 1.94 132062 88 2375 126078 1.85 128453 89 2471 125016 1.94 127487 90 2503 125204 1.96 127707 91 2571 123674 2.04 126245 92 2396 122903 1.91 125299 93 2269 121042 1.84 123311 94 2282 118933 1.88 121215 95 2185 116765 1.84 118950 96 2126 114903 1.82 117029 97 2080 115497 1.77 117577 98 1775 109329 1.60 111104 99 1251 0 100.00 1251