/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-159_S6_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-159_S6_L002_R2_001_val_2.fq.gz
Data processed at 11:37 on 2019-08-07
Alignment Stats
Sequence pairs analysed in total
15453987
Paired-end alignments with a unique best hit
6380873
Pairs without alignments under any condition
7739907
Pairs that did not map uniquely
1333207
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
195385696
Methylated C's in CpG context
7804592
Methylated C's in CHG context
1021997
Methylated C's in CHH context
3443697
Methylated C's in Unknown context
54626
Unmethylated C's in CpG context
19140558
Unmethylated C's in CHG context
40545239
Unmethylated C's in CHH context
123429613
Unmethylated C's in Unknown context
431888
Percentage methylation (CpG context)
29.0%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3152381
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3228492
original bottom strand
Deduplication
Alignments analysed
6380873
Unique alignments
4644265
Duplicates removed
1736608
Duplicated alignments were found at 1097543 different positions