EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6699555 lines in total Total number of methylation call strings processed: 13399110 Final Cytosine Methylation Report ================================= Total number of C's analysed: 136016129 Total methylated C's in CpG context: 5750945 Total methylated C's in CHG context: 699624 Total methylated C's in CHH context: 1733351 Total C to T conversions in CpG context: 13021245 Total C to T conversions in CHG context: 28351144 Total C to T conversions in CHH context: 86459820 C methylated in CpG context: 30.6% C methylated in CHG context: 2.4% C methylated in CHH context: 2.0%