CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 104967 162754 39.21 267721 2 102183 178007 36.47 280190 3 101048 156380 39.25 257428 4 108844 129351 45.70 238195 5 104942 110009 48.82 214951 6 106199 94375 52.95 200574 7 118455 93744 55.82 212199 8 58433 103959 35.98 162392 9 52746 97931 35.01 150677 10 52097 96267 35.11 148364 11 54688 99296 35.52 153984 12 52717 101250 34.24 153967 13 52100 104682 33.23 156782 14 50171 104910 32.35 155081 15 49159 106516 31.58 155675 16 45067 105439 29.94 150506 17 43509 103336 29.63 146845 18 44014 105181 29.50 149195 19 42733 105742 28.78 148475 20 44104 107209 29.15 151313 21 43554 107742 28.79 151296 22 42466 106212 28.56 148678 23 42431 105053 28.77 147484 24 42103 105834 28.46 147937 25 41475 105679 28.18 147154 26 41686 103924 28.63 145610 27 41247 106811 27.86 148058 28 41987 106436 28.29 148423 29 41409 107706 27.77 149115 30 40890 107019 27.65 147909 31 41783 105067 28.45 146850 32 40921 102553 28.52 143474 33 41160 102775 28.60 143935 34 41743 102834 28.87 144577 35 41584 102295 28.90 143879 36 41018 103063 28.47 144081 37 40124 101479 28.34 141603 38 39584 101326 28.09 140910 39 40690 102865 28.34 143555 40 40333 101359 28.47 141692 41 39866 101174 28.27 141040 42 40850 102749 28.45 143599 43 39795 101609 28.14 141404 44 39737 100104 28.42 139841 45 40192 100198 28.63 140390 46 40266 100612 28.58 140878 47 39785 98382 28.79 138167 48 39456 98824 28.53 138280 49 40722 99116 29.12 139838 50 39409 100231 28.22 139640 51 39262 99060 28.38 138322 52 39883 102265 28.06 142148 53 38919 97795 28.47 136714 54 38091 96920 28.21 135011 55 38017 93988 28.80 132005 56 37522 93228 28.70 130750 57 37829 94464 28.59 132293 58 37398 93839 28.50 131237 59 37715 92484 28.97 130199 60 37023 92853 28.51 129876 61 37102 91361 28.88 128463 62 36106 91905 28.21 128011 63 35663 90536 28.26 126199 64 35300 90493 28.06 125793 65 35902 89676 28.59 125578 66 36261 89301 28.88 125562 67 35406 87744 28.75 123150 68 34588 87337 28.37 121925 69 34696 86717 28.58 121413 70 34298 85777 28.56 120075 71 33541 84558 28.40 118099 72 33229 84428 28.24 117657 73 33089 83279 28.43 116368 74 32801 82196 28.52 114997 75 31774 81573 28.03 113347 76 31974 80793 28.35 112767 77 32277 79627 28.84 111904 78 32030 80038 28.58 112068 79 31838 78700 28.80 110538 80 30571 77664 28.25 108235 81 30708 77618 28.35 108326 82 29895 76273 28.16 106168 83 30410 77039 28.30 107449 84 30335 76174 28.48 106509 85 29610 74557 28.43 104167 86 28895 73355 28.26 102250 87 28155 72976 27.84 101131 88 28069 72172 28.00 100241 89 28009 71722 28.08 99731 90 27597 71395 27.88 98992 91 27137 70080 27.91 97217 92 26917 70143 27.73 97060 93 26902 69334 27.95 96236 94 26691 68254 28.11 94945 95 26123 67877 27.79 94000 96 26235 68620 27.66 94855 97 25311 65794 27.78 91105 98 23751 61756 27.78 85507 99 18713 48006 28.05 66719 100 24619 61061 28.73 85680 101 22094 60668 26.70 82762 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 130626 222639 36.98 353265 2 75813 211426 26.39 287239 3 35931 203305 15.02 239236 4 19188 202869 8.64 222057 5 12589 185935 6.34 198524 6 10917 183308 5.62 194225 7 8577 219054 3.77 227631 8 3945 236986 1.64 240931 9 3427 225412 1.50 228839 10 3350 219605 1.50 222955 11 3452 223239 1.52 226691 12 3400 227377 1.47 230777 13 3097 219616 1.39 222713 14 2857 218757 1.29 221614 15 2866 223016 1.27 225882 16 2551 223075 1.13 225626 17 2369 220969 1.06 223338 18 2530 221591 1.13 224121 19 2331 219467 1.05 221798 20 2397 229169 1.04 231566 21 2393 231721 1.02 234114 22 2380 229193 1.03 231573 23 2401 232356 1.02 234757 24 2420 233692 1.02 236112 25 2400 228369 1.04 230769 26 2569 229202 1.11 231771 27 2454 232578 1.04 235032 28 2289 230052 0.99 232341 29 2474 233532 1.05 236006 30 2422 234973 1.02 237395 31 2529 229338 1.09 231867 32 2467 232955 1.05 235422 33 2566 233284 1.09 235850 34 2505 230180 1.08 232685 35 2546 229718 1.10 232264 36 2531 231113 1.08 233644 37 2504 224782 1.10 227286 38 2649 228027 1.15 230676 39 2473 228672 1.07 231145 40 2619 225420 1.15 228039 41 2550 225330 1.12 227880 42 2643 225613 1.16 228256 43 2584 222007 1.15 224591 44 2527 225611 1.11 228138 45 2648 224949 1.16 227597 46 2578 222214 1.15 224792 47 2671 221246 1.19 223917 48 2760 225444 1.21 228204 49 2740 218701 1.24 221441 50 2751 218929 1.24 221680 51 2683 220198 1.20 222881 52 2757 219215 1.24 221972 53 2780 215265 1.27 218045 54 2726 218129 1.23 220855 55 2739 213459 1.27 216198 56 2741 215997 1.25 218738 57 2785 213820 1.29 216605 58 2741 211635 1.28 214376 59 2728 212198 1.27 214926 60 2635 212465 1.23 215100 61 2786 209054 1.32 211840 62 2755 209045 1.30 211800 63 2769 208106 1.31 210875 64 2899 208560 1.37 211459 65 2971 206324 1.42 209295 66 2843 202332 1.39 205175 67 2827 195555 1.43 198382 68 2926 198308 1.45 201234 69 2717 196879 1.36 199596 70 2636 191924 1.35 194560 71 2674 193901 1.36 196575 72 2672 191803 1.37 194475 73 2667 188067 1.40 190734 74 2834 186727 1.50 189561 75 2624 187644 1.38 190268 76 2551 182163 1.38 184714 77 2782 181887 1.51 184669 78 2585 180471 1.41 183056 79 2498 175982 1.40 178480 80 2575 175669 1.44 178244 81 2537 173968 1.44 176505 82 2503 170046 1.45 172549 83 2674 172311 1.53 174985 84 2568 173202 1.46 175770 85 2734 168337 1.60 171071 86 2517 169032 1.47 171549 87 2531 169064 1.47 171595 88 2651 165914 1.57 168565 89 2468 163301 1.49 165769 90 2485 162346 1.51 164831 91 2494 159286 1.54 161780 92 2504 161203 1.53 163707 93 2608 158195 1.62 160803 94 2614 154701 1.66 157315 95 2456 152834 1.58 155290 96 2549 151330 1.66 153879 97 2403 137745 1.71 140148 98 2145 126280 1.67 128425 99 1387 80751 1.69 82138 100 1550 82678 1.84 84228 101 3283 137179 2.34 140462 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 160343 329018 32.77 489361 2 80206 345307 18.85 425513 3 43635 386124 10.15 429759 4 36012 414714 7.99 450726 5 33425 472196 6.61 505621 6 27241 505760 5.11 533001 7 24302 621894 3.76 646196 8 14268 664741 2.10 679009 9 10897 620178 1.73 631075 10 10797 611216 1.74 622013 11 12222 612411 1.96 624633 12 10437 617806 1.66 628243 13 11327 625765 1.78 637092 14 11852 640189 1.82 652041 15 10440 656607 1.57 667047 16 10137 666032 1.50 676169 17 11643 668299 1.71 679942 18 9970 688362 1.43 698332 19 10078 700543 1.42 710621 20 11474 722374 1.56 733848 21 10033 723528 1.37 733561 22 10590 726002 1.44 736592 23 11618 728697 1.57 740315 24 10009 728039 1.36 738048 25 10485 730573 1.41 741058 26 11709 735258 1.57 746967 27 10123 740108 1.35 750231 28 10096 740009 1.35 750105 29 11577 738922 1.54 750499 30 10036 733692 1.35 743728 31 10359 723679 1.41 734038 32 11338 727801 1.53 739139 33 10094 724055 1.37 734149 34 10763 728781 1.46 739544 35 11429 721406 1.56 732835 36 10143 727244 1.38 737387 37 10512 719408 1.44 729920 38 11399 720505 1.56 731904 39 9795 717161 1.35 726956 40 10144 716242 1.40 726386 41 11196 716609 1.54 727805 42 10262 721374 1.40 731636 43 10356 711614 1.43 721970 44 11242 715212 1.55 726454 45 10114 707589 1.41 717703 46 10152 704927 1.42 715079 47 11075 700208 1.56 711283 48 9839 699423 1.39 709262 49 10033 689966 1.43 699999 50 10932 687279 1.57 698211 51 9795 679194 1.42 688989 52 10260 675460 1.50 685720 53 11056 670361 1.62 681417 54 9783 669925 1.44 679708 55 10122 665417 1.50 675539 56 10911 663611 1.62 674522 57 9547 669212 1.41 678759 58 9784 664879 1.45 674663 59 10997 667039 1.62 678036 60 9281 655816 1.40 665097 61 9998 651712 1.51 661710 62 10402 641603 1.60 652005 63 9358 638137 1.45 647495 64 9798 632500 1.53 642298 65 10334 627149 1.62 637483 66 9271 622494 1.47 631765 67 9166 618015 1.46 627181 68 10306 614852 1.65 625158 69 9003 610084 1.45 619087 70 9053 604921 1.47 613974 71 9862 601426 1.61 611288 72 8879 597593 1.46 606472 73 9383 586985 1.57 596368 74 9625 586015 1.62 595640 75 8783 580973 1.49 589756 76 8864 575857 1.52 584721 77 9793 569271 1.69 579064 78 8472 565261 1.48 573733 79 8515 561688 1.49 570203 80 9461 557901 1.67 567362 81 8338 548362 1.50 556700 82 8897 543395 1.61 552292 83 9318 541493 1.69 550811 84 8318 534548 1.53 542866 85 8800 523153 1.65 531953 86 9177 519945 1.73 529122 87 8107 516864 1.54 524971 88 8519 512162 1.64 520681 89 8798 505146 1.71 513944 90 7761 502523 1.52 510284 91 7990 495255 1.59 503245 92 8510 492303 1.70 500813 93 7569 486457 1.53 494026 94 7875 478901 1.62 486776 95 8458 472363 1.76 480821 96 7343 463019 1.56 470362 97 7301 448639 1.60 455940 98 7539 416430 1.78 423969 99 4625 288542 1.58 293167 100 4994 255219 1.92 260213 101 7741 418710 1.82 426451 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87757 89028 49.64 176785 2 71995 72625 49.78 144620 3 77802 81504 48.84 159306 4 69754 90344 43.57 160098 5 31324 115762 21.30 147086 6 19300 63171 23.40 82471 7 17115 68140 20.08 85255 8 17491 62207 21.95 79698 9 15354 54222 22.07 69576 10 16603 60080 21.65 76683 11 17958 57484 23.80 75442 12 17238 55417 23.73 72655 13 17781 53636 24.90 71417 14 18507 54460 25.36 72967 15 18086 50399 26.41 68485 16 16507 48174 25.52 64681 17 20309 52533 27.88 72842 18 19357 50757 27.61 70114 19 18667 49096 27.55 67763 20 16887 46881 26.48 63768 21 18266 45285 28.74 63551 22 17708 47282 27.25 64990 23 16805 45050 27.17 61855 24 15462 42373 26.73 57835 25 17298 45192 27.68 62490 26 15759 41918 27.32 57677 27 16734 43619 27.73 60353 28 15879 41249 27.80 57128 29 16454 42231 28.04 58685 30 15539 39762 28.10 55301 31 14750 40283 26.80 55033 32 14401 37960 27.50 52361 33 16743 38815 30.14 55558 34 15469 40028 27.87 55497 35 19002 42946 30.67 61948 36 15735 38252 29.15 53987 37 16053 39326 28.99 55379 38 14314 37047 27.87 51361 39 14734 37456 28.23 52190 40 15981 36959 30.19 52940 41 14149 36391 28.00 50540 42 14496 36876 28.22 51372 43 14086 36241 27.99 50327 44 13502 35238 27.70 48740 45 17020 38661 30.57 55681 46 13067 32072 28.95 45139 47 13058 32768 28.49 45826 48 13094 33122 28.33 46216 49 12564 33262 27.42 45826 50 12163 31559 27.82 43722 51 12108 30525 28.40 42633 52 11719 30927 27.48 42646 53 12468 30013 29.35 42481 54 12274 30067 28.99 42341 55 11955 30406 28.22 42361 56 11255 29272 27.77 40527 57 11733 29859 28.21 41592 58 11407 28708 28.44 40115 59 10965 27406 28.58 38371 60 11169 27802 28.66 38971 61 10175 26786 27.53 36961 62 10155 26287 27.87 36442 63 11061 26363 29.56 37424 64 10304 26118 28.29 36422 65 10204 24488 29.41 34692 66 10655 25441 29.52 36096 67 9758 26165 27.16 35923 68 11179 27126 29.18 38305 69 9668 23862 28.83 33530 70 9292 23559 28.29 32851 71 9484 22854 29.33 32338 72 9004 22473 28.61 31477 73 9083 23537 27.84 32620 74 8136 21936 27.06 30072 75 8441 21794 27.92 30235 76 8590 21488 28.56 30078 77 8349 21518 27.95 29867 78 8481 21307 28.47 29788 79 7875 20986 27.29 28861 80 7778 20314 27.69 28092 81 7632 20264 27.36 27896 82 7766 20261 27.71 28027 83 7919 19452 28.93 27371 84 8773 21286 29.19 30059 85 7443 19387 27.74 26830 86 7353 19161 27.73 26514 87 7267 18682 28.00 25949 88 7233 18568 28.03 25801 89 7653 19101 28.61 26754 90 7505 18616 28.73 26121 91 6996 18142 27.83 25138 92 6787 17736 27.68 24523 93 6866 17400 28.29 24266 94 7089 17517 28.81 24606 95 6918 17263 28.61 24181 96 6688 17373 27.80 24061 97 7268 17878 28.90 25146 98 6577 15786 29.41 22363 99 5687 0 100.00 5687 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22540 111983 16.76 134523 2 22217 114407 16.26 136624 3 20295 112788 15.25 133083 4 22212 119922 15.63 142134 5 2488 220220 1.12 222708 6 1995 273687 0.72 275682 7 1195 149342 0.79 150537 8 1260 160864 0.78 162124 9 1045 132634 0.78 133679 10 1074 126411 0.84 127485 11 1516 175455 0.86 176971 12 1172 134764 0.86 135936 13 1159 132421 0.87 133580 14 1095 127014 0.85 128109 15 1123 122886 0.91 124009 16 1013 113351 0.89 114364 17 1211 122789 0.98 124000 18 1100 108144 1.01 109244 19 1033 106476 0.96 107509 20 1009 104876 0.95 105885 21 1090 99915 1.08 101005 22 1098 108622 1.00 109720 23 1007 108843 0.92 109850 24 875 96839 0.90 97714 25 968 97535 0.98 98503 26 924 102263 0.90 103187 27 990 95814 1.02 96804 28 866 91190 0.94 92056 29 942 98104 0.95 99046 30 886 93737 0.94 94623 31 824 89342 0.91 90166 32 881 91560 0.95 92441 33 928 109480 0.84 110408 34 856 88813 0.95 89669 35 865 93139 0.92 94004 36 817 92983 0.87 93800 37 788 84358 0.93 85146 38 874 90319 0.96 91193 39 811 82186 0.98 82997 40 767 81586 0.93 82353 41 750 79983 0.93 80733 42 776 75026 1.02 75802 43 766 78354 0.97 79120 44 736 76571 0.95 77307 45 687 72171 0.94 72858 46 649 72064 0.89 72713 47 693 75206 0.91 75899 48 746 70511 1.05 71257 49 728 73801 0.98 74529 50 722 71230 1.00 71952 51 619 67370 0.91 67989 52 668 65550 1.01 66218 53 654 74053 0.88 74707 54 649 67820 0.95 68469 55 606 65843 0.91 66449 56 614 66511 0.91 67125 57 648 64141 1.00 64789 58 613 61781 0.98 62394 59 617 63986 0.96 64603 60 653 61867 1.04 62520 61 571 61982 0.91 62553 62 652 63264 1.02 63916 63 659 61731 1.06 62390 64 546 57711 0.94 58257 65 582 60488 0.95 61070 66 503 56079 0.89 56582 67 644 60243 1.06 60887 68 493 57811 0.85 58304 69 567 57059 0.98 57626 70 565 56401 0.99 56966 71 563 57822 0.96 58385 72 494 53419 0.92 53913 73 505 52423 0.95 52928 74 504 54439 0.92 54943 75 454 52578 0.86 53032 76 469 50213 0.93 50682 77 496 53095 0.93 53591 78 495 49378 0.99 49873 79 498 49219 1.00 49717 80 471 48314 0.97 48785 81 456 46761 0.97 47217 82 408 45977 0.88 46385 83 495 46651 1.05 47146 84 446 44965 0.98 45411 85 474 49505 0.95 49979 86 374 44893 0.83 45267 87 420 44378 0.94 44798 88 384 41939 0.91 42323 89 391 44489 0.87 44880 90 440 42943 1.01 43383 91 439 44918 0.97 45357 92 372 41914 0.88 42286 93 381 40710 0.93 41091 94 363 39816 0.90 40179 95 432 41876 1.02 42308 96 398 39049 1.01 39447 97 419 38827 1.07 39246 98 333 38462 0.86 38795 99 242 0 100.00 242 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30371 151199 16.73 181570 2 24092 123996 16.27 148088 3 24079 124875 16.17 148954 4 23527 119117 16.49 142644 5 4768 244340 1.91 249108 6 4283 329318 1.28 333601 7 5181 450427 1.14 455608 8 5186 438335 1.17 443521 9 5352 410919 1.29 416271 10 5214 423701 1.22 428915 11 5157 414410 1.23 419567 12 5054 386430 1.29 391484 13 4928 400290 1.22 405218 14 5084 400697 1.25 405781 15 4976 409036 1.20 414012 16 4704 393090 1.18 397794 17 4919 389610 1.25 394529 18 4724 388269 1.20 392993 19 4445 359238 1.22 363683 20 4694 380982 1.22 385676 21 4581 360647 1.25 365228 22 4548 344283 1.30 348831 23 4247 339024 1.24 343271 24 4229 325934 1.28 330163 25 4245 324802 1.29 329047 26 4233 323092 1.29 327325 27 4375 347982 1.24 352357 28 4138 325876 1.25 330014 29 4046 317275 1.26 321321 30 4114 309962 1.31 314076 31 3794 304570 1.23 308364 32 3733 295259 1.25 298992 33 3835 291589 1.30 295424 34 3804 289685 1.30 293489 35 4299 299690 1.41 303989 36 3716 294616 1.25 298332 37 3635 292143 1.23 295778 38 3840 309705 1.22 313545 39 3673 278626 1.30 282299 40 3745 294615 1.26 298360 41 3546 275601 1.27 279147 42 3550 281039 1.25 284589 43 3428 265578 1.27 269006 44 3345 262546 1.26 265891 45 3461 263048 1.30 266509 46 3295 265799 1.22 269094 47 3295 258399 1.26 261694 48 3365 253376 1.31 256741 49 3317 260090 1.26 263407 50 3157 251390 1.24 254547 51 3172 245692 1.27 248864 52 3037 233925 1.28 236962 53 3028 233585 1.28 236613 54 2897 227206 1.26 230103 55 2995 237543 1.25 240538 56 2837 226895 1.23 229732 57 2848 235930 1.19 238778 58 2830 226011 1.24 228841 59 2835 215798 1.30 218633 60 2828 223534 1.25 226362 61 2599 212982 1.21 215581 62 2740 210421 1.29 213161 63 2706 212356 1.26 215062 64 2581 204746 1.24 207327 65 2623 207710 1.25 210333 66 2587 198369 1.29 200956 67 2442 199303 1.21 201745 68 2614 206806 1.25 209420 69 2559 199023 1.27 201582 70 2332 190701 1.21 193033 71 2441 189787 1.27 192228 72 2387 187821 1.25 190208 73 2298 186226 1.22 188524 74 2353 185963 1.25 188316 75 2318 184236 1.24 186554 76 2165 177001 1.21 179166 77 2258 176157 1.27 178415 78 2243 176507 1.25 178750 79 2215 179751 1.22 181966 80 2224 172138 1.28 174362 81 2263 173210 1.29 175473 82 2123 169131 1.24 171254 83 2145 167755 1.26 169900 84 2212 165847 1.32 168059 85 2019 163903 1.22 165922 86 1984 163057 1.20 165041 87 1984 161087 1.22 163071 88 1926 155507 1.22 157433 89 1960 155008 1.25 156968 90 2099 153489 1.35 155588 91 1989 152257 1.29 154246 92 1906 151178 1.25 153084 93 1897 148757 1.26 150654 94 1768 146718 1.19 148486 95 1785 144261 1.22 146046 96 1781 140174 1.25 141955 97 1710 141251 1.20 142961 98 1422 134960 1.04 136382 99 1060 0 100.00 1060