/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R2_001_val_2.fq.gz
Data processed at 11:37 on 2019-08-07
Alignment Stats
Sequence pairs analysed in total
26009397
Paired-end alignments with a unique best hit
10439073
Pairs without alignments under any condition
13324084
Pairs that did not map uniquely
2246240
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
313246619
Methylated C's in CpG context
12166335
Methylated C's in CHG context
1553054
Methylated C's in CHH context
3545799
Methylated C's in Unknown context
59307
Unmethylated C's in CpG context
33102077
Unmethylated C's in CHG context
67300222
Unmethylated C's in CHH context
195579132
Unmethylated C's in Unknown context
676779
Percentage methylation (CpG context)
26.9%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5162472
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5276599
original bottom strand
Deduplication
Alignments analysed
10439071
Unique alignments
6699555
Duplicates removed
3739516
Duplicated alignments were found at 2094280 different positions